G183437


Basic Information

Item Value
gene id G183437
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 9758818 ~ 9769351 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU248521
aaaaaaaaaaaacaaaaaaaaaactagttttcTAAATGTATTACTAGTATTGCCTACTTCATTGCAGGGATTGGCAACTTTTCTGACAGAACAGTAGAAACTGCAATCTTTGCAACAAAATTCCTCTAACAATCCAATACATAAACAGACACAATTACACCAGCGGCTCCTAATGCTGCAACTTGTCTATTGACGGACTTTttgattttggttttatttcttaaagtataaaagcaaAACCACTGTAAATCACTTGTAAACCATTACGCTAAAAACATATCCTATGCAGTTATACAGGGTTCTATTTAAGGAACTATGAAACTGTGACGGCTTATGTAAATTGTCCAAGCACAGAATAATTGTAAATTTCAAAGTAATTTATACTGTGGCATCATTCTCATACTGGCAATTACTATAAAcgattacaattttttttttttacatttcctgAAACACATGAATTATATCAGCATTTAAAGACCACAAgctgtaataacaaaaaataagtgCAGGGACTTGTTCTAGTAACCCTCCAAAGGCTGCATAGGCAACTGCTGCTCACATATGAAAAATTATTTTGTCCGAGTACAATTTTCACAATAAACTGACAAAACGAGAGCTTTTTATCTCGGAGGAAACCCCCGGTGAGGGCCCCCACGGCCCCTGAAGCCGCCTCGCTCTCGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248521 True 686 lncRNA 0.36 2 9758818 9769351

Neighbor

gene id symbol gene type direction distance location
LOC103047154 ndst3,LOC108439183,LOC108260488,LOC107591550,LOC107551574,LOC107702380,LOC107750457 coding upstream 107843 9468574 ~ 9650975 (+)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 coding upstream 574779 9090283 ~ 9184039 (+)
cpe cpe,LOC107745061,LOC107548348,LOC107591555 coding upstream 912404 8801144 ~ 8846414 (+)
msmo1 msmo1,LOC107750426,LOC107702386,LOC107655978 coding upstream 964911 8784880 ~ 8793907 (+)
klhl2 klhl2,LOC107655955,LOC107745059,LOC107591556,LOC107702385 coding upstream 979875 8752127 ~ 8778943 (+)
LOC111195203 LOC108411626 coding downstream 86461 9855812 ~ 9865765 (+)
LOC111195273 NA coding downstream 215261 9984612 ~ 9985691 (+)
LOC111195205 NA coding downstream 226258 9995609 ~ 9996842 (+)
LOC111195208 LOC107690133,LOC107745493,LOC107715185,LOC107581013,LOC107738483,LOC107756941,LOC107569589,LOC107740227,LOC108419634,LOC108417841 coding downstream 334503 10103854 ~ 10104501 (+)
LOC111195210 NA coding downstream 380587 10149938 ~ 10154831 (+)
G183426 NA non-coding upstream 81815 9676091 ~ 9677003 (+)
G183395 NA non-coding upstream 101216 9654267 ~ 9657602 (+)
G183412 NA non-coding upstream 177442 9581073 ~ 9581376 (+)
G183406 NA non-coding upstream 187837 9568172 ~ 9570981 (+)
G183376 NA non-coding upstream 246393 9180940 ~ 9512425 (+)
G183448 NA non-coding downstream 75652 9845003 ~ 9852352 (+)
G183461 NA non-coding downstream 121429 9890780 ~ 9899728 (+)
G183468 NA non-coding downstream 137766 9907117 ~ 9916732 (+)
LOC111195206 NA non-coding downstream 148703 9918054 ~ 9993585 (+)
G183499 NA non-coding downstream 237332 10006683 ~ 10033240 (+)
G183387 NA other upstream 465115 9211334 ~ 9293703 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other upstream 774849 8870837 ~ 8983969 (+)
G183215 NA other upstream 2541679 7214471 ~ 7217139 (+)
LOC103028013 LOC108410819,LOC107548356,LOC107655813,LOC107702399,LOC107709454,LOC107562618,LOC108260988 other upstream 2748895 6897480 ~ 7009923 (+)
LOC103036850 NA other upstream 3094055 6523213 ~ 6664763 (+)
LOC111195202 NA other downstream 69585 9838936 ~ 9844659 (+)
LOC111195140 NA other downstream 295501 10064852 ~ 10072047 (+)
LOC111195207 LOC107375340,LOC106958509,LOC105896809,LOC107671222,LOC107690788 other downstream 329195 10098546 ~ 10101547 (+)
G183671 NA other downstream 340515 10109866 ~ 10110741 (+)
LOC111195212 LOC108414267,LOC106946373,LOC103130468,LOC102227983,LOC108269716,LOC108261415,LOC105936005,LOC107386469,LOC107577828,LOC107569598,LOC107677420 other downstream 376102 10145453 ~ 10171103 (+)

Expression


Co-expression Network