LOC111195206


Basic Information

Item Value
gene id LOC111195206
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 9918054 ~ 9993585 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU248569
GTGGAGCCAAGACGCAGTTTGTGGTGAATGAGGAGCTTATTAGCCTGATACACAGAGGTTTTTCTGCATCGGTCAGGTTTTTTGACTAGAGTTCGAATTGGATTCCCTCGTTCCTACGTTTGATGGCGAGCCTCCCTGGACTTCGACCCTGAAAGCTGTTTGCAAGTACTGTGGACAACTCTGATCTGTGAAAccccttttttttcctttattgctGAACCTTTATTCATCTTCAGAGCGGTAGGAGAAATACTCACCATGCCATAGACTGGACTCTTTGCACATACCCACACTTCAAATCCAACTCCCACctgtgaaacaaaagaaaaaaagaactttaTATTGTTGTGGTTttgatatatgtatattgtgttattattttaattgaacttAATTCTTGAATTTACAAAATCTAACTAATattcttgttattttattttggtattCTGGTGAAAAAGGGATATTCTGATATTGATACTGAggttgatattgatattttgcatatataaatatattattattatagattttcCTACCCGGGTAGTAGTAATATAAATAGTATCACATACAACAACATCAGGGAAAGATAATATTGGTATTATTCATATTGAAT
>TU248570
GTGGAGCCAAGACGCAGTTTGTGGTGAATGAGGAGCTTATTAGCCTGATACACAGAGGTTTTTCTGCATCGGTCAGGTTTTTTGACTAGAGTTCGAATTGGATTCCCTCGTTCCTACGTTTGATGGCGAGCCTCCCTGGACTTCGACCCTGAAAGCTGTTTGCAAGTACTGTGGACAACTCTGATCTGTGAAAccccttttttttcctttattgctGAACCTTTATTCATCTTCAGAGCGGTAGGAGAAATACTCACCATGCCATAGACTGGACTCTTTGCACATACCCACACTTCAAACTCCAACTCCCACctgtgaaaaaaaaagaactttaTATTGTTGTGGTTttgatatatgtatattgtgttattattttaattgaacttAATTCTTGAATTTACAAAATCTAACTAATattcttgttattttattttggtattCTGGTGAAAAAGGGATATTCTGATATTGATACTGAggttgatattgatattttgcatatataaatatattattattatagattttcCTACCCGGGTAGTAGTAATATAAATAGTATCACATACAACAACATCAGGGAAAGATAATATTGGTATTATTCATATTGAAT
>TU248571
GTGGAGCCAAGACGCAGTTTGTGGTGAATGAGGAGCTTATTAGCCTGATACACAGAGGTTTTTCTGCATCGGTGAGTTACTTTAATACTTACGGCGCTAGccgactatgctaagctaacgactatgctaagctaacgactatgctaagctaacaatGTATTTTCTATGGAATTCTAGCGATGCCAGCGCTTAAACGAGTCAATATAACTGTTAAAAATTATCTTTGACTCTTATAACTGAAACTATGCAAGGAGTGGGATCTGTAGAGGTAGAGAGTGCGTATTTATACACTTTTCGGGTATTTTTCAGCCTGTTTAGCCACAGGCTGGGCCGTGTGTGGCCGAGAGAAGTGGGCGCCACAAATTCGCGCGCAGTACAGACCTGCGCTGCAGAAATTTAACCCCTTGTGTGACAAGCGGTgcatttatctttatttctctGTACATAAATCctaaaatgttgtaaatgtgttCAGTTATATTGTGAATGTGTAGTTAAGTGTGAATTATTGTGTTTAGAGCTGATATCTGTTCATATAGAGCTAAACTTTGATATTGACTGAGTTTTATGACCTATTATAGGTCAGGTTTTTTGACTAGAGTTCGAATTGGATTCCCTCGTTCCTACGTTTGATGGCGAGCCTCCCTGGACTTCGACCCTGAAAGCTGTTTGCAAGTACTGTGGACAACTCTGATCTGTGAAAccccttttttttcctttattgctGAACCTTTATTCATCTTCAGAGCGGTAGGAGAAATACTCACCATGCCATAGACTGGACTCTTTGCACATACCCACACTTCAAACTCCAACTCCCACctgtgaaacaaaagaaaaaaagaactttaTATTGTTGTGGTTttgatatatgtatattgtgttattattttaattgaacttAATTCTTGAATTTACAAAATCTAACTAATattcttgttattttattttggtattCTGGTGAAAAAGGGATATTCTGATATTGATACTGAggttgatattgatattttgcatatataaatatattattattatagattttcCTACCCGGGTAGTAGTAATATAAATAGTATCACATACAACAACATCAGGGAAAGATAATATTGGTATTATTCATATTGAAT
>TU248572
GCTAAGCTAGCCGAGtatgctaagctaacgactatgctaagctaacgactatgctaagctaacaatGTATTTTCTATGGAATTCTAGCGATGCCAGCGCTTAAACGAGTCAATATAACTGTTAAAAATTATCTTTGACTCTTATAACTGAAACTATGCAAGGAGTGGGATCTGTAGAGGTAGAGAGTGCGTATTTATACACTTTTCGGGTATTTTTCAGCCTGTTTAGCCACAGGCTGGGCCGTGTGTGGCCGAGAGAAGTGGGCGCCACAAATTCGCGCGCAGTACAGACCTGCGCTGCAGAAATTTAACCCCTTGTGTGACAAGCGGTgcatttatctttatttctctGTACATAAATCctaaaatgttgtaaatgtgttCAGTTATATTGTGAATGTGTAGTTAAGTGTGAATTATTGTGTTTAGAGCTGATATCTGTTCATATAGAGCTAAACTTTGATATTGACTGAGTTTTATGACCTATTATAGGTCAGGTTTTTTGACTAGAGTTCGAATTGGATTCCCTCGTTCCTACGTTTGATGGCGAGCCTCCCTGGACTTCGACCCTGAAAGCTGTTTGCAAGTACTGTGGACAACTCTGATCTGTGAAAccccccttttttttcctttattgctGAACCTTTATTCATCTTCAGAGCGGTAGGAGAAATACTCACCATGCCATAGACTGGACTCTTTGCACATACCCACACTTCAAACTCCAACTCCCACctgtgaaacaaaagaaaaaaagaactttaTATTGTTGTGGTTttgatatatgtatattgtgttattattttaattgaacttAATTCTTGAATTTACAAAATCTAACTAATattcttgttattttattttggtattCTGGTGAAAAAGGGATATTCTGATATTGATACTGAggttgatattgatattttgcatatataaatatattattattatagattttcCTACCCGGGTAGTAGTAATATAAATAGTATCACATACAACAACATCAGGGAAAGATAATATTGGTATTATTCATATTGAAT
>XR_002651523.1
AGTAGCACGTCACCTATTGCAGCCAATAGGGTGATCGTATTACGCTGACATGAGTGGGAAATACTGTTGACCCTGACCCAGCACTTCCTTTTGGGTCAAGCAGCCGTCAGGAGCAGGTGAATGCTGGAAGAAAGTTGACAGAAAGCTAGATACAAGCCAAACTTAGGTGATAGAAACCTTATTATTATCAGTAATAACTCTCATCTACTCTAAAACGCTGAGCTGGTGGAGCCAAGACGCAGTTTGTGGTGAATGAGGAGCTTATTAGCCTGATACACAGAGGTTTTTCTGCATCGGTCAGGTTTTTTGACTAGAGTTCGAATTGGATTCCCTCGTTTCTACGTTTGATGGCGAGCCTCCCTGGACTTCGACCCTGAAAGCTGTTTGCAAGTACTGTGGACAACTCTGATCTGTGAAAccccttttttttcctttattgctGAACCTTTATTCATCTTCAGAGCGGTAGGAGAAATACTCACCATGCCATAGACTGGACTCTTTGCACATACCCACACTTCAAACTCCAACTCCCACctgtgaaacaaaagaaaaaaagaactttaTATTGTTGTGGTTttgatatatgtatattgtgttattattttaattgaacttAATTCTTGAATTTACAAAATCTAACTAATattcttgttattttattttggtattCTGGTGAAAAAGGGATATTCTGATATTGATACTGAggttgatattgatattttgcatatataaatatattattattatagattttcCTACCCGGGTAGTAGTAATATAAATAGTATCACATACAACAACATCAGGGAAAGATAATATTGGTATTATTCATATTGAATTCTAtatcttttgtttattattttcttttattataatagTATTCGTACTTACCTTTTCAATAAATGGAGGCTTCCATTAAGCTCCAAATTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248569 False 613 lncRNA 0.35 3 9980592 9993492
TU248570 False 607 lncRNA 0.35 3 9980592 9993492
TU248571 True 1124 lncRNA 0.37 3 9980592 9993492
TU248572 False 1036 lncRNA 0.36 3 9918054 9993492
XR_002651523.1 False 932 lncRNA 0.36 2 9992093 9993585

Neighbor

gene id symbol gene type direction distance location
LOC111195203 LOC108411626 coding upstream 52289 9855812 ~ 9865765 (+)
LOC103047154 ndst3,LOC108439183,LOC108260488,LOC107591550,LOC107551574,LOC107702380,LOC107750457 coding upstream 267079 9468574 ~ 9650975 (+)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 coding upstream 734015 9090283 ~ 9184039 (+)
cpe cpe,LOC107745061,LOC107548348,LOC107591555 coding upstream 1071640 8801144 ~ 8846414 (+)
msmo1 msmo1,LOC107750426,LOC107702386,LOC107655978 coding upstream 1124147 8784880 ~ 8793907 (+)
LOC111195205 NA coding downstream 2024 9995609 ~ 9996842 (+)
LOC111195208 LOC107690133,LOC107745493,LOC107715185,LOC107581013,LOC107738483,LOC107756941,LOC107569589,LOC107740227,LOC108419634,LOC108417841 coding downstream 110269 10103854 ~ 10104501 (+)
LOC111195210 NA coding downstream 156353 10149938 ~ 10154831 (+)
LOC111195211 NA coding downstream 165198 10158783 ~ 10160102 (+)
LOC103042950 NA coding downstream 524272 10517857 ~ 11115248 (+)
G183468 NA non-coding upstream 1322 9907117 ~ 9916732 (+)
G183461 NA non-coding upstream 18326 9890780 ~ 9899728 (+)
G183448 NA non-coding upstream 65702 9845003 ~ 9852352 (+)
G183437 NA non-coding upstream 148703 9758818 ~ 9769351 (+)
G183426 NA non-coding upstream 241051 9676091 ~ 9677003 (+)
G183499 NA non-coding downstream 13098 10006683 ~ 10033240 (+)
G183514 NA non-coding downstream 51644 10045229 ~ 10045463 (+)
G183641 NA non-coding downstream 56990 10050575 ~ 10050828 (+)
G183643 NA non-coding downstream 58206 10051791 ~ 10052330 (+)
G183647 NA non-coding downstream 68932 10062517 ~ 10062985 (+)
LOC111195202 NA other upstream 73395 9838936 ~ 9844659 (+)
G183387 NA other upstream 624351 9211334 ~ 9293703 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other upstream 934085 8870837 ~ 8983969 (+)
G183215 NA other upstream 2700915 7214471 ~ 7217139 (+)
LOC103028013 LOC108410819,LOC107548356,LOC107655813,LOC107702399,LOC107709454,LOC107562618,LOC108260988 other upstream 2908131 6897480 ~ 7009923 (+)
LOC111195140 NA other downstream 71267 10064852 ~ 10072047 (+)
LOC111195207 LOC107375340,LOC106958509,LOC105896809,LOC107671222,LOC107690788 other downstream 104961 10098546 ~ 10101547 (+)
G183671 NA other downstream 116281 10109866 ~ 10110741 (+)
LOC111195212 LOC108414267,LOC106946373,LOC103130468,LOC102227983,LOC108269716,LOC108261415,LOC105936005,LOC107386469,LOC107577828,LOC107569598,LOC107677420 other downstream 151868 10145453 ~ 10171103 (+)
G183680 NA other downstream 158382 10151967 ~ 10158707 (+)

Expression


Co-expression Network