G183643


Basic Information

Item Value
gene id G183643
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 10051791 ~ 10052330 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU248788
tgttttttgtggaatacagtaggtctctccgagttgaatgtgtacacctgcacattaaactgttttgcagcccccattgtctgcaggagctaagcaaagaaatcccccctccccccctccgaaaaacgggtgaattttgaattatctttctgcctacgtaggcagaaactcacagaccagcccaccttggctcgagaaactcccagaggcggagctgaagcgacgcaacatcaccgctcatcagttaggaggtgggaggcagtgagcggcagagcggtggaggggcgtcgcagtgctcctagccaatcagaggagagatatttgcatgctgtttgcatgtatgaatattcatgagcaaagctggaatccggtcattttggacacacccctaaaacagtccattaaaaaagagctatacagagacacctgagcacttttttttttttacaaaaacggctcacatgtcattcattcatactagagaccacaactagacattttaaaatgaaagaaaaaacgacggaaggtgacctttaaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248788 True 540 lncRNA 0.46 1 10051791 10052330

Neighbor

gene id symbol gene type direction distance location
LOC111195205 NA coding upstream 54949 9995609 ~ 9996842 (+)
LOC111195273 NA coding upstream 66100 9984612 ~ 9985691 (+)
LOC111195203 LOC108411626 coding upstream 186026 9855812 ~ 9865765 (+)
LOC103047154 ndst3,LOC108439183,LOC108260488,LOC107591550,LOC107551574,LOC107702380,LOC107750457 coding upstream 400816 9468574 ~ 9650975 (+)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 coding upstream 867752 9090283 ~ 9184039 (+)
LOC111195208 LOC107690133,LOC107745493,LOC107715185,LOC107581013,LOC107738483,LOC107756941,LOC107569589,LOC107740227,LOC108419634,LOC108417841 coding downstream 51524 10103854 ~ 10104501 (+)
LOC111195210 NA coding downstream 97608 10149938 ~ 10154831 (+)
LOC111195211 NA coding downstream 106453 10158783 ~ 10160102 (+)
LOC103042950 NA coding downstream 465527 10517857 ~ 11115248 (+)
LOC103043730 lhcgr,LOC108412992 coding downstream 1339164 11391494 ~ 11402281 (+)
G183641 NA non-coding upstream 963 10050575 ~ 10050828 (+)
G183514 NA non-coding upstream 6328 10045229 ~ 10045463 (+)
G183499 NA non-coding upstream 18551 10006683 ~ 10033240 (+)
LOC111195206 NA non-coding upstream 58206 9918054 ~ 9993585 (+)
G183468 NA non-coding upstream 135059 9907117 ~ 9916732 (+)
G183647 NA non-coding downstream 10187 10062517 ~ 10062985 (+)
G183649 NA non-coding downstream 11353 10063683 ~ 10064248 (+)
G183651 NA non-coding downstream 21097 10073427 ~ 10073669 (+)
G183657 NA non-coding downstream 21366 10073696 ~ 10074991 (+)
G183676 NA non-coding downstream 87538 10139868 ~ 10141492 (+)
LOC111195202 NA other upstream 207132 9838936 ~ 9844659 (+)
G183387 NA other upstream 758088 9211334 ~ 9293703 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other upstream 1067822 8870837 ~ 8983969 (+)
G183215 NA other upstream 2834652 7214471 ~ 7217139 (+)
LOC103028013 LOC108410819,LOC107548356,LOC107655813,LOC107702399,LOC107709454,LOC107562618,LOC108260988 other upstream 3041868 6897480 ~ 7009923 (+)
LOC111195140 NA other downstream 12522 10064852 ~ 10072047 (+)
LOC111195207 LOC107375340,LOC106958509,LOC105896809,LOC107671222,LOC107690788 other downstream 46216 10098546 ~ 10101547 (+)
G183671 NA other downstream 57536 10109866 ~ 10110741 (+)
LOC111195212 LOC108414267,LOC106946373,LOC103130468,LOC102227983,LOC108269716,LOC108261415,LOC105936005,LOC107386469,LOC107577828,LOC107569598,LOC107677420 other downstream 93123 10145453 ~ 10171103 (+)
G183680 NA other downstream 99637 10151967 ~ 10158707 (+)

Expression


Co-expression Network