G183680


Basic Information

Item Value
gene id G183680
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 10151967 ~ 10158707 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU248852
CCTGGATCCAGAAATACTAAAGCTGACGCACTTTCCCGCATGTTTGAAGACAATCTAGAAGGTCCAGAAAACGCACCTATTTTAAAGCCAGAAATTGTTTTAGCTCCCGTGAGATGGGAAATTTCAGAAGAAATTGATCAGTTTAATTCTGTAACTTTCCCCCCAGCTCAGTGCCCGCCAGACAGAACCTACGTACCAGACCAGTGCAGAGCCAGATTAATTACATGGGCTCATACTTCTCCTTCGTCAGGACATCCAGGGGAGACTCGGACCTTCCAATTGTTAGAAAATCGTTTTTGGTGGGAGAATATGCGTTCAGATATTCATGATTTTGTTTCCTCTTGCTCAGTCTGTGCTCAAAGTAAAACTCCTCGTACTCTACCGGCCGGTAAATTAGTTCCCTTACCGGTGCCAGCTCGACCTTGGTCTCACCTAGCAGTTGATTTTGTTACCGATCTCCCTGTATCCATGGGTAAAACTGTTATTATGACTATTGTGGATCGTTTCTCTCGTGGTGTAAGGTTCATCCCCTTTAGCAAACTACCCAATGCGCTAGAAGCGGCAGAATCTCTGTTTAATCATGTGTTTCGTATATTTGGTGTTCCAGAAGATATTGTTTCGGATCGAGGACCTCAGTTTATCTCTCAAGTCTGGTCAGCATTTATGAATGCGTTAGGGATTTCTGTTAGTCTATCATCAGGTTATCATCCTCAGAGTAATGGACAATGTGAGAGGATGAATCAAGAATTGGGTAAATTCTTAAGAATTTATTGTTCAAATAATTTCCATGACTGGGCCAAATATCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248852 True 807 TUCP 0.43 3 10151967 10158707

Neighbor

gene id symbol gene type direction distance location
LOC111195208 LOC107690133,LOC107745493,LOC107715185,LOC107581013,LOC107738483,LOC107756941,LOC107569589,LOC107740227,LOC108419634,LOC108417841 coding upstream 47466 10103854 ~ 10104501 (+)
LOC111195205 NA coding upstream 155125 9995609 ~ 9996842 (+)
LOC111195273 NA coding upstream 166276 9984612 ~ 9985691 (+)
LOC111195203 LOC108411626 coding upstream 286202 9855812 ~ 9865765 (+)
LOC103047154 ndst3,LOC108439183,LOC108260488,LOC107591550,LOC107551574,LOC107702380,LOC107750457 coding upstream 500992 9468574 ~ 9650975 (+)
LOC111195211 NA coding downstream 76 10158783 ~ 10160102 (+)
LOC103042950 NA coding downstream 359150 10517857 ~ 11115248 (+)
LOC103043730 lhcgr,LOC108412992 coding downstream 1232787 11391494 ~ 11402281 (+)
rtn4 rtn4,LOC108412986 coding downstream 1297573 11456280 ~ 11479384 (+)
LOC103044327 LOC108429269,LOC108260508,LOC108260727,LOC105890925,LOC106577117 coding downstream 1345979 11504686 ~ 11510392 (+)
G183676 NA non-coding upstream 10475 10139868 ~ 10141492 (+)
G183657 NA non-coding upstream 76976 10073696 ~ 10074991 (+)
G183651 NA non-coding upstream 78298 10073427 ~ 10073669 (+)
G183649 NA non-coding upstream 87719 10063683 ~ 10064248 (+)
G183647 NA non-coding upstream 88982 10062517 ~ 10062985 (+)
G183725 NA non-coding downstream 69511 10228218 ~ 10228492 (+)
G183770 NA non-coding downstream 287852 10446559 ~ 10446774 (+)
G183787 NA non-coding downstream 417249 10575956 ~ 10578292 (+)
G183795 NA non-coding downstream 500295 10659002 ~ 10659413 (+)
G183796 NA non-coding downstream 502936 10661643 ~ 10661945 (+)
G183671 NA other upstream 41226 10109866 ~ 10110741 (+)
LOC111195207 LOC107375340,LOC106958509,LOC105896809,LOC107671222,LOC107690788 other upstream 50420 10098546 ~ 10101547 (+)
LOC111195140 NA other upstream 79920 10064852 ~ 10072047 (+)
LOC111195202 NA other upstream 307308 9838936 ~ 9844659 (+)
G183387 NA other upstream 858264 9211334 ~ 9293703 (+)
rnf24 rnf24,LOC107551705,LOC107689472 other downstream 102877 10261584 ~ 10317300 (+)
G183892 rps27a other downstream 1240355 11399062 ~ 11431926 (+)
clhc1 NA other downstream 1273277 11431984 ~ 11456373 (+)
ppp1r21 ppp1r21,LOC107578819 other downstream 1324345 11483052 ~ 11503479 (+)
G183996 crgm2,LOC103042598,LOC108441183,LOC108427435,LOC108427436,LOC108427240,LOC108260579,LOC108260664,LOC108260583 other downstream 1532194 11690901 ~ 11691936 (+)

Expression


Co-expression Network