G183787


Basic Information

Item Value
gene id G183787
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 10575956 ~ 10578292 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU249060
tttttaaaggctgtccttcaatgtgaaactaataatacaataataggCCACCTTACTGGTGAGTtcttgtgtgtacttaatgttttggctgctctggtgtactgtagacatacaaatgagtgatatttgttgaacggttgtacttgtaggaaaatgTAAGCATTTGTTGTTGAGTCTATTGTATACTtgtgtagtttgtagctgttgtatttgtgggctgttgatgtgtattaagttaatataactaagtcaagagagagaatatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249060 True 266 lncRNA 0.34 2 10575956 10578292

Neighbor

gene id symbol gene type direction distance location
LOC111195211 NA coding upstream 415854 10158783 ~ 10160102 (+)
LOC111195210 NA coding upstream 421125 10149938 ~ 10154831 (+)
LOC111195208 LOC107690133,LOC107745493,LOC107715185,LOC107581013,LOC107738483,LOC107756941,LOC107569589,LOC107740227,LOC108419634,LOC108417841 coding upstream 471455 10103854 ~ 10104501 (+)
LOC111195205 NA coding upstream 579114 9995609 ~ 9996842 (+)
LOC111195273 NA coding upstream 590265 9984612 ~ 9985691 (+)
LOC103043730 lhcgr,LOC108412992 coding downstream 813202 11391494 ~ 11402281 (+)
rtn4 rtn4,LOC108412986 coding downstream 877988 11456280 ~ 11479384 (+)
LOC103044327 LOC108429269,LOC108260508,LOC108260727,LOC105890925,LOC106577117 coding downstream 926394 11504686 ~ 11510392 (+)
LOC103040140 NA coding downstream 1053513 11631805 ~ 11634990 (+)
LOC107197667 crgm2,LOC103042598,LOC108427436,LOC108427435,LOC108441183,LOC108260664,LOC108260583,LOC108260584,LOC108260580 coding downstream 1957476 12535768 ~ 12536662 (+)
G183770 NA non-coding upstream 129182 10446559 ~ 10446774 (+)
G183725 NA non-coding upstream 347464 10228218 ~ 10228492 (+)
G183676 NA non-coding upstream 434464 10139868 ~ 10141492 (+)
G183657 NA non-coding upstream 500965 10073696 ~ 10074991 (+)
G183651 NA non-coding upstream 502287 10073427 ~ 10073669 (+)
G183795 NA non-coding downstream 80710 10659002 ~ 10659413 (+)
G183796 NA non-coding downstream 83351 10661643 ~ 10661945 (+)
G183803 NA non-coding downstream 265903 10844195 ~ 10844690 (+)
G183810 NA non-coding downstream 377314 10955606 ~ 11161051 (+)
LOC111195214 LOC106533383 non-coding downstream 438008 11016300 ~ 11018394 (+)
rnf24 rnf24,LOC107551705,LOC107689472 other upstream 258656 10261584 ~ 10317300 (+)
LOC111195212 LOC108414267,LOC106946373,LOC103130468,LOC102227983,LOC108269716,LOC108261415,LOC105936005,LOC107386469,LOC107577828,LOC107569598,LOC107677420 other upstream 404853 10145453 ~ 10171103 (+)
G183680 NA other upstream 417249 10151967 ~ 10158707 (+)
G183671 NA other upstream 465215 10109866 ~ 10110741 (+)
LOC111195207 LOC107375340,LOC106958509,LOC105896809,LOC107671222,LOC107690788 other upstream 474409 10098546 ~ 10101547 (+)
G183892 rps27a other downstream 820770 11399062 ~ 11431926 (+)
clhc1 NA other downstream 853692 11431984 ~ 11456373 (+)
ppp1r21 ppp1r21,LOC107578819 other downstream 904760 11483052 ~ 11503479 (+)
G183996 crgm2,LOC103042598,LOC108441183,LOC108427435,LOC108427436,LOC108427240,LOC108260579,LOC108260664,LOC108260583 other downstream 1112609 11690901 ~ 11691936 (+)
LOC111195141 LOC107096934,LOC108427427,LOC103480793 other downstream 2956770 13535062 ~ 13545495 (+)

Expression


Co-expression Network