G184171


Basic Information

Item Value
gene id G184171
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 12956175 ~ 13055713 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU249564
aaaaaaaaaaaaaaaaaacaattgtagGTCTAAACACTTTTTTAGATGAAGACCAAAATTGTCACCATTTGCTATAAGGAAGTTGGCTTAGATGGTCAAGAACAACCCAAGAATCACAGAGGCAAAAGAACTGAAATCTACTGTATGTGGACACCAGAATCACTGTGTACTGAAAGACTCACGtccaagaaagaagcccttgctctgAAACTGACACCCAAAGTTTGCCACTGACCACATGGACAAGAGTCTTAGGGTCAGATGGGACAAAAGTTTATAAGAAGTAAAGATGAAGAATCtaaccccaagaacactgtgctaactgttaaacatggtggtggtagcaatATAACCTTTAATCAATGGCTAGTCTGTTGAAACCCACACATAACTTGGTGTTCCAATCGCACAATAGATGGGTTCATGTGGCATTAGGGTTACCAGCTGTGGATGGGGTTAGTGTAAGGTCAGGGGTAGAAGATCGGGTTAGGGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249564 True 495 lncRNA 0.40 2 12956175 13055713

Neighbor

gene id symbol gene type direction distance location
LOC103041365 LOC108427445 coding upstream 163892 12765229 ~ 12792283 (+)
LOC107197667 crgm2,LOC103042598,LOC108427436,LOC108427435,LOC108441183,LOC108260664,LOC108260583,LOC108260584,LOC108260580 coding upstream 419513 12535768 ~ 12536662 (+)
LOC103040140 NA coding upstream 1321185 11631805 ~ 11634990 (+)
LOC103044327 LOC108429269,LOC108260508,LOC108260727,LOC105890925,LOC106577117 coding upstream 1445783 11504686 ~ 11510392 (+)
rtn4 rtn4,LOC108412986 coding upstream 1476791 11456280 ~ 11479384 (+)
LOC103041974 LOC108427427 coding downstream 250236 13305949 ~ 13526412 (+)
hgfac NA coding downstream 574829 13630542 ~ 13654273 (+)
LOC103042284 LOC103042284,LOC108427430 coding downstream 651976 13707689 ~ 13709643 (+)
slc24a2 slc24a2 coding downstream 679533 13735246 ~ 13785212 (+)
heatr5b heatr5b coding downstream 774117 13829830 ~ 13856036 (+)
LOC111195224 NA non-coding upstream 147028 12807264 ~ 12809147 (+)
LOC111195222 NA non-coding upstream 152453 12798756 ~ 12803722 (+)
G184101 NA non-coding upstream 160656 12795189 ~ 12795519 (+)
G184093 NA non-coding upstream 273432 12682209 ~ 12682743 (+)
LOC111195162 NA non-coding upstream 277241 12676208 ~ 12678934 (+)
G184182 NA non-coding downstream 22245 13077958 ~ 13130798 (+)
G184192 NA non-coding downstream 242071 13297784 ~ 13298115 (+)
LOC111195227 NA non-coding downstream 278782 13334495 ~ 13338071 (+)
G184201 NA non-coding downstream 490449 13546162 ~ 13550045 (+)
G184203 LOC108427427,LOC108260577 non-coding downstream 503103 13558816 ~ 13591074 (+)
G183996 crgm2,LOC103042598,LOC108441183,LOC108427435,LOC108427436,LOC108427240,LOC108260579,LOC108260664,LOC108260583 other upstream 1264239 11690901 ~ 11691936 (+)
ppp1r21 ppp1r21,LOC107578819 other upstream 1452696 11483052 ~ 11503479 (+)
clhc1 NA other upstream 1499802 11431984 ~ 11456373 (+)
G183892 rps27a other upstream 1524249 11399062 ~ 11431926 (+)
rnf24 rnf24,LOC107551705,LOC107689472 other upstream 2638875 10261584 ~ 10317300 (+)
LOC111195141 LOC107096934,LOC108427427,LOC103480793 other downstream 479349 13535062 ~ 13545495 (+)
LOC103025917 LOC108427442 other downstream 604434 13660147 ~ 13691164 (+)
c21h11orf68 drap1,cunh11orf68,c29h11orf68,LOC106608686,LOC107684582,LOC105923970,LOC107748024,LOC107670404,LOC103032366 other downstream 995074 14050787 ~ 14063300 (+)
G184594 NA other downstream 2203663 15259376 ~ 15261534 (+)
chrna9 chrna9,LOC107548308 other downstream 2684505 15740218 ~ 15750689 (+)

Expression


Co-expression Network