LOC111195141 (LOC107096934,LOC108427427,LOC103480793)


Basic Information

Item Value
gene id LOC111195141
gene name LOC107096934,LOC108427427,LOC103480793
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13535062 ~ 13545495 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU249593
taatagtGCTTTGGTCTGCTTGGTATAAATGGGGCAGGGAAAACCACCACGTTTAAGATGCTGACTGGAGATATTACAGCATCTGGAGGAGAAGCTTTCCTCAATGGATACAGtATGCGTACGGAGATGGGTCAGGTTCATCAGAACATGGGTTACTGTCCTCAGTTTGATGCTATAGATGATTTGCTGACTGGGCGAGAGCATCTGGAGTTCTACGCTCGGCTGAGGGGAGTTCCAGAGCAGGAGGTTGCATCGGTAGCAGAGTGGGGCATACAGAAACTGGGTCTTGTGAAATACTCCAACAAGTCTGCTGGGACCTACAGTGGAGGAAACAAACGCAAGCTGTCCACAGCCATGTCCCTGATTGGCTGCCCACCTGTGGTCTTCCTGgacgAGCCAACAACAGGAATGGATCCAAAAGCCCGCCGGTTCCTGTGGGACTGCATCCTCAGTGTGATCAAAGAGggactctc
>XM_022681548.1
tgtgtgtgttaatagtGCTTTGGTCTGCTTGGTATAAATGGGGCAGGGAAAACCACCACGTTTAAGATGCTGACTGGAGATATTACAGCATCTGGAGGAGAAGCTTTCCTCAATGGATACAGtATGCGTACGGAGATGGGTCAGGTTCATCAGAACATGGGTTACTGTCCTCAGTTTGATGCTATAGATGATTTGCTGACTGGGCGAGAGCATCTGGAGTTCTACGCTCGGCTGAGGGGAGTTCCAGAGCAGGAGGTTGCATCGGTAGCAGAGTGGGGCATACAGAAACTGGGTCTTGTGAAATACTCCAACAAGTCTGCTGGGACCTACAGTGGAGGAAACAAACGCAAGCTGTCCACAGCCATGTCCCTGATTGGCTGCCCACCTGTGGTCTTCCTGgacgAGCCAACAACAGGAATGGATCCAAAAGCCCGCCGGTTCCTGTGGGACTGCATCCTCAGTGTGATCAAAGAGggactc

Function

NR:

description
PREDICTED: ATP-binding cassette sub-family A member 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249593 False 473 TUCP 0.51 4 13535071 13545495
XM_022681548.1 True 480 mRNA 0.51 4 13535062 13545493

Neighbor

gene id symbol gene type direction distance location
LOC103041974 LOC108427427 coding upstream 8650 13305949 ~ 13526412 (+)
LOC103047288 LOC108427443 coding upstream 268662 12899191 ~ 13266400 (+)
LOC103041365 LOC108427445 coding upstream 742779 12765229 ~ 12792283 (+)
LOC107197667 crgm2,LOC103042598,LOC108427436,LOC108427435,LOC108441183,LOC108260664,LOC108260583,LOC108260584,LOC108260580 coding upstream 998400 12535768 ~ 12536662 (+)
LOC103040140 NA coding upstream 1900072 11631805 ~ 11634990 (+)
hgfac NA coding downstream 85047 13630542 ~ 13654273 (+)
LOC103042284 LOC103042284,LOC108427430 coding downstream 162194 13707689 ~ 13709643 (+)
slc24a2 slc24a2 coding downstream 189751 13735246 ~ 13785212 (+)
heatr5b heatr5b coding downstream 284335 13829830 ~ 13856036 (+)
LOC103029182 LOC108429273,LOC108260865 coding downstream 311474 13856969 ~ 13906069 (+)
LOC111195227 NA non-coding upstream 196991 13334495 ~ 13338071 (+)
G184192 NA non-coding upstream 236947 13297784 ~ 13298115 (+)
G184182 NA non-coding upstream 404264 13077958 ~ 13130798 (+)
G184171 NA non-coding upstream 479349 12956175 ~ 13055713 (+)
LOC111195224 NA non-coding upstream 725915 12807264 ~ 12809147 (+)
G184201 NA non-coding downstream 667 13546162 ~ 13550045 (+)
G184203 LOC108427427,LOC108260577 non-coding downstream 13321 13558816 ~ 13591074 (+)
G184268 NA non-coding downstream 179261 13724756 ~ 13729942 (+)
G184285 NA non-coding downstream 197533 13743028 ~ 13743451 (+)
LOC111195229 NA non-coding downstream 240383 13785878 ~ 13801142 (+)
G183996 crgm2,LOC103042598,LOC108441183,LOC108427435,LOC108427436,LOC108427240,LOC108260579,LOC108260664,LOC108260583 other upstream 1843126 11690901 ~ 11691936 (+)
ppp1r21 ppp1r21,LOC107578819 other upstream 2031583 11483052 ~ 11503479 (+)
clhc1 NA other upstream 2078689 11431984 ~ 11456373 (+)
G183892 rps27a other upstream 2103136 11399062 ~ 11431926 (+)
rnf24 rnf24,LOC107551705,LOC107689472 other upstream 3217762 10261584 ~ 10317300 (+)
LOC103025917 LOC108427442 other downstream 114652 13660147 ~ 13691164 (+)
c21h11orf68 drap1,cunh11orf68,c29h11orf68,LOC106608686,LOC107684582,LOC105923970,LOC107748024,LOC107670404,LOC103032366 other downstream 505292 14050787 ~ 14063300 (+)
G184594 NA other downstream 1713881 15259376 ~ 15261534 (+)
chrna9 chrna9,LOC107548308 other downstream 2194723 15740218 ~ 15750689 (+)
G184727 slit2 other downstream 2907845 16453340 ~ 16486424 (+)

Expression


Co-expression Network