LOC111195225


Basic Information

Item Value
gene id LOC111195225
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13226333 ~ 13303680 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU249635
AGGGCCACGCGCTGATGGCATGGGGTGAGCTGGAGTTTAAACATTGGTGGGCAAACTTAAAGACACACAAAGCTCTTATCAGACACTGGATTAAACTACAGGAATTGAGAAATGAAGCGGTAAAAGAGTCACATAAAGTTCCTGTGGAGGAAACTATGAAGGAGTGATTATTACTTTCACCGGAGAGTGAGgacactgcagtaaatacaaaagGGTGGTGGTTGGTCTGGAGCCTCTCTGGAATCATTGTATGCAAAGCAGAAAATTAATGGAGCCCAACATGCCTCTATACTTTGCTGAGTGACCCTGGTTGTACGAAGATGTCCCGCTGCAGTTCTACTTGTGAAGCCACAGCAAATTTGgGTCGTCCTCCCTACCTGTGAGCTGCTGGAGTACCGACCAGGTGCGCGAGAAGCAGAGCTTTTGCTGGAGCCCATAGAGGAGTCAACACTCTTTCCACTGTAGCAGACGCAGTGGAAGATGAAGATGAACATTCCCTGTAGAGAATTAAAGATGGTGAAGAGATAGGCCATGATCACTGTGCTCTCGTTCACGTACATCAGGCCAAACGCCCAGCTGTCACCCTGTACCAGAGATGCCATAGATTCTTCAGAAGCCTCAGATGAGATACTGGTGAACAGATGGAGCCtcacaaacagacagagagtaaaaagaggagaacatgaaagtgtaaaggagaagaagaggaaaaaaagaggtgAAGATATGAAAGTGCAGCAGAGGTGCAGGGTGGCTGTAATCAGTGTGGAAACTCTCCAGCAGAGAGCTGTAGAGCCTCAGGGCCTCAGATTTCACTGCCCTGATTATAAAcctgtgttaatttaacactcctgctttactaacacacacacgctgtCTCGTAGACCAGGATTAACCCCTTCGATTTCTAGCAGGTATATTTCCATAGACATCTGCCCTACCTTTTCTAAATGCACATTTAGTACACCATTCAAACAGAACAATgttcgtccacatactgctgccttCTCAAGAGCTGAAGGCACTGGTGCTATGCAGTGGTTAGCTGCAGCGCCAGACCAATCCCTAATTTAAAATGCTATTGGACAAAATATCAGCACTCCACACCTACCACAGAATACAAGCTGCATGGGAAAGATTATTGCAAGACAACATTAGGATCCTCTACAACAACATGCTGAGATGAGATAACACACAACGTCTCAAaatgtagctcaataaataagACCAAAACTTGCACATGCCAATTTATATTCGTACAATTTCTGGTACTATTTATCTTCCTTGTGAACACCATTAAAATTCAACACTTTCTTCTggttgtg
>TU249639
CCTGTTTCTCCCTGGTCAGGTCCTtacagtgtcactgctggaatAACAATAGTCCAATAACAACACCCTGAGTGCTGAGAATATAATACagagtataagggagtataaAGACAAATAGTTTTTTGGAATAATGTGAACATTGGGTCTCATTCATGTAACTCTTCATACTGACACGTACAGAACTTCTTTATACTGACATCTGAACTCGTCTATAAACAACCAACACACTGCTTTATagaggaattatttatttttttacattactttttagTACTGTATAAGCCAATATAATATAGCTCTCAGATATGGCATtgataaaataaactataatgGTGGCAacctttaaaagtaaaaaaaataaaagacattttatttattaaactttatgaatgaaCTGGATGAGAACTGTACTGTGATAAGAATCCTTGGCCATTTCATCCAGCCACAGCCAAGGTGGCGTTAAGTGTTGGACACTGGTGGTCACTGGATGGCTCTGATGCTGACCAGTGGGCCACTGTTAAGCCACTTTATGCAGCACAgtctcctgcacacacacacggacacacacacacacacacaccatacataCAGTCCCTAATGTTGTCCAGACAGCCGGAGTCAGGCTTCAGGATAGCCGTGTGGTGGAACATCTTGTAGAGGGCGATGCCAAGGAAGATGACATTCAGC
>XR_002651537.1
GATTCAAACATTGTGTACAGGGCCACGCGCTGATGGCATGGGGTGAGCTGGAGTTTAAACATTGGTGGGCAAACTTAAAGACACACAAAGCTCTTATCAGACACTGGATTAAACTACAGGAATTGAGAAATGAAGCGGTAAAAGAGTCACATAAAGTTCCTGTGGAGGAAACTATGAAGGAGTGATTATTACTTTCACCGGAGAGTGAGgacactgcagtaaatacaaaagGGTGGTGGTTGGTCTGGAGCCTCTCTGGAATCATTGTATGCAAAGCAGAAAATTAATGGAGCCCAACATGCCTCTATACTTTGCTGAGTGACCCTGGTTGTACGAAGATGTCCCGCTGCAGTTCTACTTGTGAAGCCACAGCAAATTTGgGTCGTCCTCCCTACCTGTGAGCTGCTGGAGTACCGACCAGGTGCGCGAGAAGCAGAGCTTTTGCTGGAGCCCATAGAGGAGTCAACACTCTTTCCACTGTAGCAGACGCAGTGGAAGATGAAGATGAACATTCCCTGTAGAGAATTAAAGATGGTGAAGAGATAGGCCATGATCACTGTGCTCTCGTTCACGTACATCAGGCCAAACGCCCAGAAGCTGTCACCCTGTACCAGAGATGCCATAGATTCTTCAGAAGCCTCAGATGAGATACTGGTGAACAGATGGAGCCtcacaaacagacagagagtaaaaagaggagaacatgaaagtgtaaaggagaagaagaggaaaaaaagaggtgAAGATATGAAAGTGCAGCAGAGGTGCAGGGTGGCTGTAATCAGTGTGGAAACTCTCCAGCAGAGAGCTGTAGAGCCTCAGGGCCTCAGATTTCACTGCCCTGATTATAAAcctgtgttaatttaacactcctgctttactaacacacacacgctgtCTCGTAGACCAGGATTAACCCCTTCGATTTCTAGCAGGTATATTTCCATAGACATCTGCCCTACCTTTTCTAAATGCACATTTAGTACACCATTCAAACAGAACAATgttcgtccacatactgctgccttCTCAAGAGCTGAAGGCACTGGTGCTATGCAGTGGTTAGCTGCAGCGCCAGACCAATCCCTAATTTAAAATGCTATTGGACAAAATATCAGCACTCCACACCTACCACAGAATACAAGCTGCATGGGAAAGATTATTGCAAGACAACATTAGGATCCTCTACAACAACATGCTGAGATGAGATAACACACAACGTCTCAAaatgtagctcaataaataagACCAAAACTTGCACATGCCAATTTATATTCGTACAATTTCTGGTACTATTTATCTTCCTTGTGAACACCATTAAAATTCAACACTTTC
>XR_002651538.1
GATTCAAACATTGTGTACAGGGCCACGCGCTGATGGCATGGGGTGAGCTGGAGTTTAAACATTGGTGGGCAAACTTAAAGACACACAAAGCTCTTATCAGACACTGGATTAAACTACAGGAATTGAGAAATGAAGCGGTAAAAGAGTCACATAAAGTTCCTGTGGAGGAAACTATGAAGGAGTGATTATTACTTTCACCGGAGAGTGAGgacactgcagtaaatacaaaagGGTGGTGGTTGGTCTGGAGCCTCTCTGGAATCATTGTATGCAAAGCAGAAAATTAATGGAGCCCAACATGCCTCTATACTTTGCTGAGTGACCCTGGTTGTACGAAGATGTCCCGCTGCAGTTCTACTTGTGAAGCCACAGCAAATTTGgGTCGTCCTCCCTACCTGTGAGCTGCTGGAGTACCGACCAGGTGCGCGAGAAGCAGAGCTTTTGCTGGAGCCCATAGAGGAGTCAACACTCTTTCCACTGTAGCAGACGCAGTGGAAGATGAAGATGAACATTCCCTGTAGAGAATTAAAGATGGTGAAGAGATAGGCCATGATCACTGTGCTCTCGTTCACGTACATCAGGCCAAACGCCCAGCTGTCACCCTGTACCAGAGATGCCATAGATTCTTCAGAAGCCTCAGATGAGATACTGGTGAACAGATGGAGCCtcacaaacagacagagagtaaaaagaggagaacatgaaagtgtaaaggagaagaagaggaaaaaaagaggtgAAGATATGAAAGTGCAGCAGAGGTGCAGGGTGGCTGTAATCAGTGTGGAAACTCTCCAGCAGAGAGCTGTAGAGCCTCAGGGCCTCAGATTTCACTGCCCTGATTATAAAcctgtgttaatttaacactcctgctttactaacacacacacgctgtCTCGTAGACCAGGATTAACCCCTTCGATTTCTAGCAGGTATATTTCCATAGACATCTGCCCTACCTTTTCTAAATGCACATTTAGTACACCATTCAAACAGAACAATgttcgtccacatactgctgccttCTCAAGAGCTGAAGGCACTGGTGCTATGCAGTGGTTAGCTGCAGCGCCAGACCAATCCCTAATTTAAAATGCTATTGGACAAAATATCAGCACTCCACACCTACCACAGAATACAAGCTGCATGGGAAAGATTATTGCAAGACAACATTAGGATCCTCTACAACAACATGCTGAGATGAGATAACACACAACGTCTCAAaatgtagctcaataaataagACCAAAACTTGCACATGCCAATTTATATTCGTACAATTTCTGGTACTATTTATCTTCCTTGTGAACACCATTAAAATTCAACACTTTC
>XR_002651539.1
ACACTCACCTGGATGTCATCAAGAtgtacttttcacacctttcaaTTGGACTGTTTACACTGGAAAGAACTACTTCCCCACAGATTGACTGAAGGAGGTGTCAACTGGAGGATTGCATCCTACTTTTCCGGGATACAGAACAGCACCAGACCTTCCCCCAGCCCTGGCTCAGAGCTCCCGGTCTAGACATCAAAAAAGGCAGGAACAGAAATGTGTGGCAGCTGAAGGAACACACGGTCTGACAGGGTGGTGGTTGGTCTGGAGCCTCTCTGGAATCATTGTATGCAAAGCAGAAAATTAATGGAGCCCAACATGCCTCTATACTTTGCTGAGTGACCCTGGTTGTACGAAGATGTCCCGCTGCAGTTCTACTTGTGAAGCCACAGCAAATTTGgGTCGTCCTCCCTACCTGTGAGCTGCTGGAGTACCGACCAGGTGCGCGAGAAGCAGAGCTTTTGCTGGAGCCCATAGAGGAGTCAACACTCTTTCCACTGTAGCAGACGCAGTGGAAGATGAAGATGAACATTCCCTGTAGAGAATTAAAGATGGTGAAGAGATAGGCCATGATCACTGTGCTCTCGTTCACGTACATCAGGCCAAACGCCCAGAAGCTGTCACCCTGTACCAGAGATGCCATAGATTCTTCAGAAGCCTCAGATGAGATACTGGTGAACAGATGGAGCCtcacaaacagacagagagtaaaaagaggagaacatgaaagtgtaaaggagaagaagaggaaaaaaagaggtgAAGATATGAAAGTGCAGCAGAGGTGCAGGGTGGCTGTAATCAGTGTGGAAACTCTCCAGCAGAGAGCTGTAGAGCCTCAGGGCCTCAGATTTCACTGCCCTGATTATAAAcctgtgttaatttaacactcctgctttactaacacacacacgctgtCTCGTAGACCAGGATTAACCCCTTCGATTTCTAGCAGGTATATTTCCATAGACATCTGCCCTACCTTTTCTAAATGCACATTTAGTACACCATTCAAACAGAACAATgttcgtccacatactgctgccttCTCAAGAGCTGAAGGCACTGGTGCTATGCAGTGGTTAGCTGCAGCGCCAGACCAATCCCTAATTTAAAATGCTATTGGACAAAATATCAGCACTCCACACCTACCACAGAATACAAGCTGCATGGGAAAGATTATTGCAAGACAACATTAGGATCCTCTACAACAACATGCTGAGATGAGATAACACACAACGTCTCAAaatgtagctcaataaataagACCAAAACTTGCACATGCCAATTTATATTCGTACAATTTCTGGTACTATTTATCTTCCTTGTGAACACCATTAAAATTCAACACTTTC

Function

GO:

id name namespace
GO:0003006 developmental process involved in reproduction biological_process

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU249635 False 1325 TUCP 0.45 5 13242023 13281803
TU249639 False 687 lncRNA 0.40 2 13226333 13232044
XR_002651537.1 False 1335 lncRNA 0.44 5 13242034 13281821
XR_002651538.1 False 1332 lncRNA 0.44 5 13242034 13281821
XR_002651539.1 True 1349 lncRNA 0.46 6 13242034 13303680

Neighbor

gene id symbol gene type direction distance location
mpdz mpdz coding downstream 347313 12816580 ~ 12879020 (-)
LOC103046990 rasgrp2,LOC108427446,LOC108261011,LOC106608563 coding downstream 465402 12707652 ~ 12760931 (-)
LOC103040758 LOC108427447 coding downstream 701013 11673093 ~ 12525320 (-)
cfap36 cfap36 coding downstream 1598859 11613656 ~ 11627474 (-)
pnpt1 pnpt1,LOC106607983 coding downstream 1614482 11597278 ~ 11611851 (-)
LOC103027614 LOC103027614 coding upstream 495841 13799521 ~ 13807329 (-)
LOC103028152 NA coding upstream 509718 13813398 ~ 13827899 (-)
drap1 drap1,LOC106608686 coding upstream 747050 14050730 ~ 14058635 (-)
lurap1l lurap1l coding upstream 883996 14187676 ~ 14198597 (-)
LOC103033946 tyrp1,tyrp-1,LOC108260967,LOC105903131 coding upstream 896543 14200223 ~ 14207686 (-)
LOC111195223 NA non-coding downstream 413893 12806281 ~ 12812440 (-)
G184152 NA non-coding downstream 430814 12795244 ~ 12795519 (-)
G184150 NA non-coding downstream 431369 12792782 ~ 12794964 (-)
G184094 NA non-coding downstream 543636 12682495 ~ 12682697 (-)
LOC111195221 NA non-coding downstream 592742 12528574 ~ 12633591 (-)
G184244 NA non-coding upstream 213999 13517679 ~ 13576322 (-)
G184250 LOC108427427 non-coding upstream 250008 13553688 ~ 13559115 (-)
LOC111195158 NA non-coding upstream 299596 13603276 ~ 13605583 (-)
LOC111195153 NA non-coding upstream 312003 13615683 ~ 13618625 (-)
G184256 NA non-coding upstream 315952 13619632 ~ 13619836 (-)
G184051 NA other downstream 1029675 12195212 ~ 12196658 (-)
gtf2a1l NA other downstream 1814689 11402707 ~ 11411644 (-)
G183880 NA other downstream 1919512 11306289 ~ 11306821 (-)
G183585 NA other downstream 3373952 9845822 ~ 9852381 (-)
G183559 NA other downstream 3568719 9655313 ~ 9657614 (-)
LOC111195226 NA other upstream 247452 13551132 ~ 13594753 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other upstream 685129 13988809 ~ 14040245 (-)
LOC103032041 NA other upstream 759964 14063644 ~ 14116456 (-)
trnas-gcu_5 NA other upstream 786026 14089706 ~ 14089787 (-)
trnas-gcu_6 NA other upstream 787829 14091509 ~ 14091590 (-)

Expression


Co-expression Network