LOC111195226


Basic Information

Item Value
gene id LOC111195226
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13551132 ~ 13594753 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU249668
GGGCGCTCTCTGAAAACGggtgggaaaaaaacacaggaacacctggtttaattatttaattatcagAGTGTGGGATAATGGCAGGGTTCTCTGTTTGTGAGGAAGACCGAGCCGCAGAACCTGAGATTAAAGGAGTCTGTAAAACCCGCCTCGACATTCTCACTGGACCGGGAGCGAAGGAAGAAGGAATTTTGTTTGGAGTCTGTTCAACCAACCGTCAGCCGATCAGCCTTTCTACATATGCTGCCACTGCCCCAGAGACGTGTGGGTGGATGCCACAAGaGCTGTTGGTGACATCGCAATTGGATGGAGGCAAAGCAGGCCAGAGGTCAGAGGAGGCCGATGGGGCAGAACAGCAGTCAGTCCATTCCTCCTGAGAGAACTCCACACCAGTAGTGCTTCCATctaaaccaccaccaccagacCCCTCAAAGTGAAAAGTCAAGAAAACAAAGCTATCAGcagccgTCCTACTATCAATGATGATGATCTTCTGAACCCAGGAGAAAGCATAGACGGCTTATGAATGGTAAGGATGCAAGCTGCACAAGCCATGAAAATGTAAGATGTCCTTATGAACATAAAACATGGCGACATAATAGAGGACACCCAAAGTTCCGGTCTTTTCCCAGACTGCGCCTCCAGCGCATTGTGAAAGTGACCTGTCGCAGTCGTGCACTGAGGAGAATCAACCACGGGATGCTCTCCATCACCATCCAGTCATACCCGGGCTGCAGAGGACCGCCCGGCAGGCAAGCACGGTATGGTCAGCTACAACTAGGTCACTTCTCTGCAGGGGGGAGAGTGCTAAGTCCGACTGAAGGAAAAGCCACTGAGCATATGGGGTATCTGCTACTATGCTCTAATCCATCTGGATAGACTGTCTATGTCTCTGGCTTGCCCGTTCTCTCTGTGGAGGTTCACATTTTTTAGACtttatagtttatagagtaaGTGTGAGTAAATAGCTTGTGAAATGCAGGGAAAGTCTCTGTCTATAAGAAAGAacttaaaggtttttttttttttttttttaacattttgcgatTGCTTGTTAAACAGCCCATAATTATGGAAATTTATCATGGAAACAATTTGCATTAACCCTTATGCTGTAAGTCAAACTGACCCATTTTaagtatgaaatatatatattttttatttgctcaaCATTTTCTGTAGGGCTTAATCAGTGTATATATTGTAAGGGGAAATTTTCGATTCCTAAATGCATTTTGCTTAACAGGTGCATTTTGACCTCATAGTAAGCTTGTAAAATTCCATGTTATAAAGTTTGCATAAGGTTTGATCTCACGTTTCCCTCATGTTGTCCCAAATTTGTCTGTAGTGAATGTGTTTCTGTTGCTGTTTATTGATGCTGATTTATGTCCGGTTAGCACAAATGCTAATCCAGCAAGCTATCTAGAGAGACAGGCACtttattttcctccaaactaTCGGAACAGCATCGCTGTACTGAAGagcctcactcactctcacagtctctctcacatgcatgcacacagcTGATGACATCTCCTCTTTCTAAGGTAGGTTAGAAAATGCTGCTACACTTTATTTAGtttcctccattaaagctcCCAGTTAAAATCAGTTAGTTAGCAcattataatattacaatattctaaTTCTTACACAggtcagccacaacattaaaaccagctctGTATATCCATTTCACTGGTCAGTCAACTTTACAATTACCTTGTTTCTGCGATCCTTGTAGCtgattttaatggttttaaatgtttttttcagtacaTAGAAATAGTTTTGTTCCTTACATTTCgaggtaaaatgtaaaaagtaagtATAACACTGATATTTACAC
>TU249671
GGGCGCTCTCTGAAAACGggtgggaaaaaaacacaggaacacctggtttaattatttaattatcagAGTGTGGGATAATGGCAGGGTTCTCTGTTTGTGAGGAAGACCGAGCCGCAGAACCTGAGATTAAAGGAGTCTGTAAAACCCGCCTCGACATTCTCACTGGACCGGGAGCGAAGGAAGAAGGAATTTTGTTTGGAGTCTGTTCAACCAACCGTCAGCCGATCAGCCTTTCTACATATGCTGCCACTGCCCCAGAGACGTGTGGGTGGATGCCACAAGaGCTGTTGGTGACATCGCAATTGGATGGAGGCAAAGCAGGCCAGAGGTCAGAGGAGGCCGATGGGGCAGAACAGCAGTCAGTCCATTCCTCCTGAGAGAACTCCACACCAGTAGTGCTTCCATctaaaccaccaccaccagacCCCTCAAAGTGAAAAGTCAAGAAAACAAAGCTATCAGccgTCCTACTATCAATGATGATGATCTTCTGAACCCAGGAGAAAGCATAGACGGCTTATGAATGGTAAGGATGCAAGCTGCACAAGCCATGAAAATGTAAGATGTCCTTATGAACATAAAACATGGCGACATAATAGAGGACACCCAAAGTTCCGGTCTTTTCCCAGACTGCGCCTCCAGCGCATTGTGAAAGTGACCTGTCGCAGTCGTGCACTGAGGAGAATCAACCACGGGATGCTCTCCATCACCATCCAGTCATACCCGGGCTGCAGAGGACCGCCCGGCAGGCAAGCACGGTATGGTCAGCTACAACTAGGTCACTTCTCTGCAGGGGGGAGAGTGCTAAGTCCGACTGAAGGAAAAGCCACTGAGCATATGGGGTATCTGCTACTATGCTCTAATCCATCTGGATAGACTGTCTATGTCTCTGGCTTGCCCGTTCTCTCTGTGGAGGTTCACATTTTTTAGACtttatagtttatagagtaaGTGTGAGTAAATAGCTTGTGAAATGCAGGGAAAGTCTCTGTCTATAAGAAAGAacttaaaggtttttttttttttttttttaacattttgcgatTGCTTGTTAAACAGCCCATAATTATGGAAATTTATCATGGAAACAATTTGCATTAACCCTTATGCTGTAAGTCAAACTGACCCATTTTaagtatgaaatatatatattttttatttgctcaaCATTTTCTGTAGGGCTTAATCAGTGTATATATTGTAAGGGGAAATTTTCGATTCCTAAATGCATTTTGCTTAACAGGTGCATTTTGACCTCATAGTAAGCTTGTAAAATTCCATGTTATAAAGTTTGCATAAGGTTTGATCTCACGTTTCCCTCATGTTGTCCCAAATTTGTCTGTAGTGAATGTGTTTCTGTTGCTGTTTATTGATGCTGATTTATGTCCGGTTAGCACAAATGCTAATCCAGCAAGCTATCTAGAGAGACAGGCACtttattttcctccaaactaTCGGAACAGCATCGCTGTACTGAAGagcctcactcactctcacagtctctctcacatgcatgcacacagcTGATGACATCTCCTCTTTCTAAGGTAGGTTAGAAAATGCTGCTACACTTTATTTAGtttcctccattaaagctcCCAGTTAAAATCAGTTAGTTAGCAcattataatattacaatattctaaTTCTTACACAggtcagccacaacattaaaaccagctctGTATATCCATTTCACTGGTCAGTCAACTTTACAATTACCTTGTTTCTGCGATCCTTGTAGCtgattttaatggttttaaatgtttttttcagtacaTAGAAATAGTTTTGTTCCTTACATTTCgaggtaaaatgtaaaaagtaagtATAACACTGATATTTACAC
>XR_002651540.1
GGTTCTCTGTTTGTGAGGAAGACCGAGCCGCAGAACCTGAGATTAAAGGAGTCTGTAAAACCCGCCTCGACATTCTCACTGGACCGGGAGCGAAGGAAGAAGGAATTTTGTTTGGAGTCTGTTCAACCAACCGTCAGCCGATCAGCCTTTCTACATATGCTGCCACTGCCCCAGAGACGTGTGGGTGGATGCCACAAGaGCTGTTGGTGACATCGCAATTGGATGGAGGCAAAGCAGGCCAGAGGTCAGAGGAGGCCGATGGGGCAGAACAGCAGTCAGTCCATTCCTCCTGAGAGAACTCCACACCAGTAGTGCTTCCATctaaaccaccaccaccagacCCCTCAAAGTGAAAAGTCAAGAAAACAAAGCTATCAGGTAagaaagcaggaaaaaaatCTACCTcgatacagaaaaagagaaatatctCCAGCTAAGAGCTTCATCCTTCAAGGTGAAATGTGTAGAGTGGAAAGcaggagagcagagagagagaggagatggaaggaaaaaaagctgaaaaatgaGGTGAAGAAACTGATAAGAGGACATGAGTAGAAGGTGGAAACTCAACAAAAAAGGGAAAGGAAGGGTAGAAAGGGAAGAGAAGTGGCGCGCACTGGTGCGACTCTTAGAGCAAATAAAAGGTGAGATTTGTGAAATGAAACTCCCCGCGGCGTAGACAGTGTGTGTGCAAATGTTTAATCATGTGTTTCTGCACAGAGCAATCTGTAGGACAAACACACATCAGGCTTCAACGAGGACACGACAGCGAGGCATGAAAAACtgcagcattt
>XR_002651541.1
aaaaaacacaggaacacctggtttaattatttaattatcagAGTGTGGGATAATGGCAGGGTTCTCTGTTTGTGAGGAAGACCGAGCCGCAGAACCTGAGATTAAAGGAGTCTGTAAAACCCGCCTCGACATTCTCACTGGACCGGGAGCGAAGGAAGAAGGAATTTTGTTTGGAGTCTGTTCAACCAACCGTCAGCCGATCAGCCTTTCTACATATGCTGCCACTGCCCCAGAGACGTGTGGGTGGATGCCACAAGaGCTGTTGGTGACATCGCAATTGGATGGAGGCAAAGCAGGCCAGAGGTCAGAGGAGGCCGATGGGGCAGAACAGCAGTCAGTCCATTCCTCCTGAGAGAACTCCACACCAGTAGTGCTTCCATctaaaccaccaccaccagacCCCTCAAAGTGAAAAGTCAAGAAAACAAAGCTATCAGccgTCCTACTATCAATGATGATGATCTTCTGAACCCAGGAGAAAGCATAGACGGCTTATGAATGGTAAGGATGCAAGCTGCACAAGCCATGAAAATGTAAGATGTCCTTATGAACATAAAACATGGCGACATAATAGAGGACACCCAAAGTTCCGGTCTTTTCCCAGACTGCGCCTCCAGCGCATTGTGAAAGTGACCTGTCGCAGTCGTGCACTGAGGAGAATCAACCACGGGATGCTCTCCATCACCATCCAGTCATACCCGGGCTGCAGAGGACCGCCCGGCAGGCAAGCACGGTATGGTCAGCTACAACTAGGTCACTTCTCTGCAGGGGGGAGAGTGCTAAGTCCGACTGAAGGAAAAGCCACTGAGCATATGGGGTATCTGCTACTATGCTCTAATCCATCTGGATAGACTGTCTATGTCTCTGGCTTGCCCGTTCTCTCTGTGGAGGTTCACATTTTTTAGACtttatagtttatagagtaaGTGTGAGTAAATAGCTTGTGAAATGCAGGGAAAGTCTCTGTCTATAAGAAAGAacttaaaggtttttttttttttttttttaacattttgcgatTGCTTGTTAAACAGCCCATAATTATGGAAATTTATCATGGAAACAATTTGCATTAACCCTTATGCTGTAAGTCAAACTGACCCATTTTaagtatgaaatatatatattttttatttgctcaaCATTTTCTGTAGGGCTTAATCAGTGTATATATTGTAAGGGGAAATTTTCGATTCCTAAATGCATTTTGCTTAACAGGTGCATTTTGACCTCATAGTAAGCTTGTAAAATTCCATGTTATAAAGTTTGCATAAGGTTTGATCTCACGTTTCCCTCATGTTGTCCCAAATTTGTCTGTAGTGAATGTGTTTCTGTTGCTGTTTATTGATGCTGATTTATGTCCGGTTAGCACAAATGCTAATCCAGCAAGCTATCTAGAGAGACAGGCACtttattttcctccaaactaTCGGAACAGCATCGCTGTACTGAAGagcctcactcactctcacagtctctctcacatgcatgcacacagcTGATGACATCTCCTCTTTCTAAGGTAGGTTAGAAAATGCTGCTACACTTTATTTAGtttcctccattaaagctcCCAGTTAAAATCAGTTAGTTAGCAcattataatattacaatattctaaTTCTTACACAggtcagccacaacattaaaaccagctctGTATATCCATTTCACTGGTCAGTCAACTTTACAATTACCTTGTTTCTGCGATCCTTGTAGCtgattttaatggttttaaatgtttttttcagtacaTAGAAATAGTTTTGTTCCTTACATTTCgaggtaaaatgtaaaaagtaagtATAACACTGATATTTACACCATCAattttatatatgaataaatgacCCACAAAACACCTGGTATCTTCATTTcgtcaattttattttatatgactTCATTAATGGTATAAAAGTGTTTAATCTGCTTTTGTATGAGTAACTTATTGTCTTTACTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249668 False 1852 TUCP 0.42 4 13551270 13594753
TU249671 False 1849 TUCP 0.42 4 13551270 13594753
XR_002651540.1 False 797 lncRNA 0.48 3 13564419 13594669
XR_002651541.1 True 1962 lncRNA 0.41 4 13551132 13594728

Neighbor

gene id symbol gene type direction distance location
mpdz mpdz coding downstream 672112 12816580 ~ 12879020 (-)
LOC103046990 rasgrp2,LOC108427446,LOC108261011,LOC106608563 coding downstream 790201 12707652 ~ 12760931 (-)
LOC103040758 LOC108427447 coding downstream 1025812 11673093 ~ 12525320 (-)
cfap36 cfap36 coding downstream 1923658 11613656 ~ 11627474 (-)
pnpt1 pnpt1,LOC106607983 coding downstream 1939281 11597278 ~ 11611851 (-)
LOC103027614 LOC103027614 coding upstream 204768 13799521 ~ 13807329 (-)
LOC103028152 NA coding upstream 218645 13813398 ~ 13827899 (-)
drap1 drap1,LOC106608686 coding upstream 455977 14050730 ~ 14058635 (-)
lurap1l lurap1l coding upstream 592923 14187676 ~ 14198597 (-)
LOC103033946 tyrp1,tyrp-1,LOC108260967,LOC105903131 coding upstream 605470 14200223 ~ 14207686 (-)
G184224 NA non-coding downstream 253017 13297735 ~ 13298115 (-)
LOC111195223 NA non-coding downstream 738692 12806281 ~ 12812440 (-)
G184152 NA non-coding downstream 755613 12795244 ~ 12795519 (-)
G184150 NA non-coding downstream 756168 12792782 ~ 12794964 (-)
G184094 NA non-coding downstream 868435 12682495 ~ 12682697 (-)
LOC111195158 NA non-coding upstream 8523 13603276 ~ 13605583 (-)
LOC111195153 NA non-coding upstream 20930 13615683 ~ 13618625 (-)
G184256 NA non-coding upstream 24879 13619632 ~ 13619836 (-)
G184330 NA non-coding upstream 81584 13676337 ~ 13677778 (-)
G184338 NA non-coding upstream 130005 13724758 ~ 13729943 (-)
LOC111195225 NA other downstream 247452 13226333 ~ 13303680 (-)
G184051 NA other downstream 1354474 12195212 ~ 12196658 (-)
gtf2a1l NA other downstream 2139488 11402707 ~ 11411644 (-)
G183880 NA other downstream 2244311 11306289 ~ 11306821 (-)
G183585 NA other downstream 3698751 9845822 ~ 9852381 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other upstream 394056 13988809 ~ 14040245 (-)
LOC103032041 NA other upstream 468891 14063644 ~ 14116456 (-)
trnas-gcu_5 NA other upstream 494953 14089706 ~ 14089787 (-)
trnas-gcu_6 NA other upstream 496756 14091509 ~ 14091590 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other upstream 1714756 15309509 ~ 15340580 (-)

Expression


Co-expression Network