G184354 (heatr5b)


Basic Information

Item Value
gene id G184354
gene name heatr5b
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13834781 ~ 13836418 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU249814
GCAGCTGCATATGCAAAATaattatatcaaaatataatCCCTAATGACTCCCTAATGAAACTCTGGATGTGTTTTATGTAGAGTTAATGTGACACCATTACTAGTTAAGGGCTGGTGggtatgtctctgtgtgtgtgtgtgttttaccaaTAGAAGGCTCCTGTATGAGTGGAGAGGCTGTAGCACTGAGGCTCTGGACCAGACTGCCCAGTTCTTTCAGAGCACACACCATCACGTGCTGACTGGCCGACACGTCCGCAGCCCCACCCTTATTTTCACCACTGCTGTCACTGACTACCGCCTCTGTTACCACAGCCACTGCCCTCATCTGCTTGTTGATGGCCTGGCAGATCTCCTTGGCGGCAGCAATTTGGGCCTTCTCCCCCAGCAGGCCTCCTAGTGTGGCACGCAAGGCAAAAGAGACACAGCGGCGCGAGTACACTGCCTCTACGTGGGTCTGTGTGGCCCGAGGGTGAGCCACCAGCTCTAATACGTGTGACAGGAAGGTGGCAAAGTTCCTCTCCAGCCACTGACCGCCCAGTGTGGTCACAAA

Function

symbol description
heatr5b Predicted to be involved in endocytosis; protein localization; and retrograde transport, endosome to Golgi. Predicted to be active in endocytic vesicle. Orthologous to human HEATR5B (HEAT repeat containing 5B).

NR:

description
PREDICTED: HEAT repeat-containing protein 5B isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249814 True 553 lncRNA 0.52 2 13834781 13836418

Neighbor

gene id symbol gene type direction distance location
LOC103028152 NA coding downstream 6882 13813398 ~ 13827899 (-)
LOC103027614 LOC103027614 coding downstream 27452 13799521 ~ 13807329 (-)
mpdz mpdz coding downstream 955761 12816580 ~ 12879020 (-)
LOC103046990 rasgrp2,LOC108427446,LOC108261011,LOC106608563 coding downstream 1073850 12707652 ~ 12760931 (-)
LOC103040758 LOC108427447 coding downstream 1309461 11673093 ~ 12525320 (-)
drap1 drap1,LOC106608686 coding upstream 214312 14050730 ~ 14058635 (-)
lurap1l lurap1l coding upstream 351258 14187676 ~ 14198597 (-)
LOC103033946 tyrp1,tyrp-1,LOC108260967,LOC105903131 coding upstream 363805 14200223 ~ 14207686 (-)
LOC103042598 crgm2,LOC103042598,LOC108427435,LOC108427436,LOC108260664,LOC108260584,LOC108260580,LOC108441183,LOC108260581 coding upstream 502296 14338714 ~ 14340598 (-)
LOC103043225 NA coding upstream 1422959 15259377 ~ 15261518 (-)
G184338 NA non-coding downstream 104838 13724758 ~ 13729943 (-)
G184330 NA non-coding downstream 157003 13676337 ~ 13677778 (-)
G184256 NA non-coding downstream 214945 13619632 ~ 13619836 (-)
LOC111195153 NA non-coding downstream 216156 13615683 ~ 13618625 (-)
LOC111195158 NA non-coding downstream 229198 13603276 ~ 13605583 (-)
G184396 NA non-coding upstream 91688 13928106 ~ 13928313 (-)
G184422 LOC104965148,LOC104966956,LOC103385808 non-coding upstream 292110 14128528 ~ 14131095 (-)
LOC111195216 NA non-coding upstream 343687 14180105 ~ 14185344 (-)
G184447 NA non-coding upstream 499528 14335946 ~ 14336641 (-)
LOC111195232 NA non-coding upstream 1117026 14953444 ~ 15001573 (-)
LOC111195226 NA other downstream 240028 13551132 ~ 13594753 (-)
LOC111195225 NA other downstream 531101 13226333 ~ 13303680 (-)
G184051 NA other downstream 1638123 12195212 ~ 12196658 (-)
gtf2a1l NA other downstream 2423137 11402707 ~ 11411644 (-)
G183880 NA other downstream 2527960 11306289 ~ 11306821 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other upstream 152391 13988809 ~ 14040245 (-)
LOC103032041 NA other upstream 227226 14063644 ~ 14116456 (-)
trnas-gcu_5 NA other upstream 253288 14089706 ~ 14089787 (-)
trnas-gcu_6 NA other upstream 255091 14091509 ~ 14091590 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other upstream 1473091 15309509 ~ 15340580 (-)

Expression


Co-expression Network