LOC103043324


Basic Information

Item Value
gene id LOC103043324
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15047747 ~ 15052870 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU250410
CAGTCATGGCGGGTGTGGAGAAGCAGAGCGAGGTTTCTCTCCCTAAACACTCCTACTGGTTCGACTTCTGGACTTTTCTCCTGTTTGACATCGTGTTTTTCCTCTTCATGTACTTTATCGTTCCCTGAGTGACTCCATCTATGACATGCAAGGAGCAGGAGAATGGAGCTGGTGGCTGAGCTGCAGAGAAGATGAGACTGGTTGGAGACAGCGGTACAGCCATCACTGCACCCATGGCTTTGTCTGATCTTATCCAGTAATGTGGCCGTCTGCAGCACAGAACTACATTTTACACTCTTTAAAACCCTGACTCAAACTGCTACACTAACCCAACACTCCGCAAAATTGTGGTTAATCTTTAAACTtggataaattattattttgatttaatACCTCTGCTCTGTTTGCTGACCTGTAGGAATGTTCAAGGTATGCTGTGTGTGAAAAAGTGGTTGGTATAAGTTtgtttttatctgattcatGTGATTCACTGGCAACTAAAATTAAATtctcttaatatatttttaa
>XR_452783.2
TATTGTGTAAAGGAGGGAGGAAGCGGAAGCGCGCAGTCATGGCGGGTGTGGAGAAGCAGAGCGAGGTTTCTCTCCCTAAACACTCCTACTGGTTCGACTTCTGGACTTTTCTCCTGTTTGACATCGTGTTTTTCCTCTTCATGTACTTTATCGTTCCCTGAGTGACTCCATCTATGACATGCAAGGAGCAGGAGAATGGAGCTGGTGGCTGAGCTGCAGAGAAGATGAGACTGGTTGGAGACAGCGGTACAGCCATCACTGCACCCATGGCTTTGTCTGATCTTATCCAGTAATGTGGCCGTCTGCAGCACAGAACTACATTTTACACTCTTTAAAACCCTGACTCAAACTGCTACACTAACCCAACACTCCGCAAAATGAATCTAATCATTCCTTTACAtgccttttgtctttttctaaATTGTGGTTAATCTTTAAACTtggataaattattattttgatttaatACCTCTGCTCTGTTTGCTGACCTGTAGGAATGTTCAAGGTATGCTGTGTGTGAAAAAGTGGTTGGTATAAGTTtgtttttatctgattcatGTGATTCACTGGCAACTAAAATTAAATtctcttaatatatttttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250410 False 528 lncRNA 0.42 4 15047747 15052837
XR_452783.2 True 604 lncRNA 0.41 3 15047747 15052870

Neighbor

gene id symbol gene type direction distance location
LOC103042598 crgm2,LOC103042598,LOC108427435,LOC108427436,LOC108260664,LOC108260584,LOC108260580,LOC108441183,LOC108260581 coding downstream 707149 14338714 ~ 14340598 (-)
LOC103033946 tyrp1,tyrp-1,LOC108260967,LOC105903131 coding downstream 840061 14200223 ~ 14207686 (-)
lurap1l lurap1l coding downstream 849150 14187676 ~ 14198597 (-)
drap1 drap1,LOC106608686 coding downstream 989112 14050730 ~ 14058635 (-)
LOC103028152 NA coding downstream 1219848 13813398 ~ 13827899 (-)
LOC103043225 NA coding upstream 206507 15259377 ~ 15261518 (-)
LOC103042179 NA coding upstream 212238 15265108 ~ 15303915 (-)
LOC103041667 ldb2b,LOC108434309,LOC107562611,LOC107750444,LOC108260957,LOC107548319,LOC107671914,LOC107702407 coding upstream 279265 15332135 ~ 15352286 (-)
LOC103041363 qdpr,dhpr,qdprb1,LOC108437732,LOC107750446,LOC107702409,LOC107562607 coding upstream 314239 15367109 ~ 15372437 (-)
LOC103043828 LOC108437730 coding upstream 375523 15428393 ~ 15560832 (-)
LOC111195232 NA non-coding downstream 46174 14953444 ~ 15001573 (-)
G184447 NA non-coding downstream 711106 14335946 ~ 14336641 (-)
LOC111195216 NA non-coding downstream 862403 14180105 ~ 14185344 (-)
G184422 LOC104965148,LOC104966956,LOC103385808 non-coding downstream 916652 14128528 ~ 14131095 (-)
G184396 NA non-coding downstream 1119434 13928106 ~ 13928313 (-)
G184818 NA non-coding upstream 319902 15372772 ~ 15379206 (-)
G184816 gtf2e2,LOC107671915,LOC107548363 non-coding upstream 331844 15384714 ~ 15387101 (-)
LOC111195235 NA non-coding upstream 359797 15412667 ~ 15419207 (-)
G184836 NA non-coding upstream 511752 15564622 ~ 15564883 (-)
G184853 NA non-coding upstream 607797 15660667 ~ 15664885 (-)
LOC103032041 NA other downstream 931291 14063644 ~ 14116456 (-)
trnas-gcu_6 NA other downstream 956157 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 957960 14089706 ~ 14089787 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other downstream 1007502 13988809 ~ 14040245 (-)
LOC111195226 NA other downstream 1452994 13551132 ~ 13594753 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other upstream 256639 15309509 ~ 15340580 (-)
smim18 smim18 other upstream 323788 15376658 ~ 15381208 (-)
smim14 smim14 other upstream 613241 15666111 ~ 15671954 (-)
lrat lrat other upstream 1845308 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 2177215 17230085 ~ 17241027 (-)

Expression


Co-expression Network