LOC103043525 (tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524)


Basic Information

Item Value
gene id LOC103043525
gene name tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15309509 ~ 15340580 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU250424
aacagctgtgctgaacttcaagagttgtaaagaggtagatgTTCTAATCCATTATATGGCAAGAAatgctcaactaagtaaagaaaaaaataataatttaagaaatgaaagtcagtcaatctgaaaaattacaagaactttgaaagtatcctcaattgcagtcacaaagaccatcaaaaatgttatgatgaaactggcactcatcagaaaaaaaaggacaaaatttacaaaagttaccagcctcagaataCAAAAGAATATtctgatacaatgtaaagaataGATGTAAAGTTTTTATACCATGTACATTTGCTTTAGAAATCAGCAGACTAAATcagaaattaaaattattattattttttttaatctttaaagaTGAAATAAATCTTTCTGATTTTTGGTGCTTATAATAACAGCTTATAGGACTGAATATCTAGAGAAGTACTATGGAAATAcaaagctttcatgtttaaaacaaacattagGATTTTCTTGAAAAATGTTGGCATTGCtcttgtttccttttttcttttctcattttaatttttcaaacttcagtgtgttttttgaaGGAGTAAGACTTCATAATACATGCATAagtataaaatagatatttaataaaaataaaataaaaataactgacatgccaaaagtcatgggacagcagtgtgtattttaataatgaagTTTTgccttgggaatgcccacacctgtattgTAAGTTGTGAGTGATGTTggacactggccagcatgctcatggcaaggccaggtgaattatgggagtgcGGCCTAATAGTCAGTGCCAGAAGGAAGGGACGTTTAATTTTTGAAGTTGTGTGGGCGTTTAATATTCCTATCAGTCATAGAAGTTATATaagtcatagaaggcattaccacccacagtggacagtgtacTGAGTTGCTTTTGTCTAGAACTGCCTGTGTGCACAAATGATCAAGCAAATTTAGCAATGCAAGGGACACAATAATAGCTCCTGTCTCATGCCATTTGGTATGGCagtgtatatatttagtataagAAACAAGTCAAATATGAAGTTTGCCATCGTATCTTTtaggttttgttttatttggacaTTTTTTCTTGCTGAATTTTCATCTATAATTATGGAAGCTGccccaatgttttttttcctctgatatCACTAAGCTTAGCATGTAATAAGGTCCAGCAGTCAGTCCCCAAACCCCAGTGTGTACTGGGATAATCTATACCAGCACATAACCTTTATATCTCAATTCTATCTGCATAGTGTGTGCAAATGTTGGGTCTTTTTGTAAGATATTAAGCTAAATGCTTTCTAACCTATCAGACTTCAAGACTATGATCAGACTGCAGAGCAATTGTTATTATGATTAGATAGAACTTGTGCGTCCAGATATCACAAATGTATCTGTACAGTTTCCTGTGTTATAAAGATTGATGCCTTTAATTCATTACTCTGGATTTGATGAGGTTGTTGGTTGTCGTATTGTAAATGTTGCAAAAGACGCACTGAAATCTGATTATAATCGCATTTCAGACCACCTCAGACAAATGTGGTTTGGATCCGACttgcaaaaatctgatttaatgtgGTTTTAGTCTGTACAGACAATTAAAAAGCAATCTGGACACAATCTAGatataaaaatctgatttggactagcagtctgaacatagcctcTTCTCACCTCTCTTATTCTGAttcatacagatacagtatgtttcctcttattttattgattaatatcGATATCTGCAGTTACTGAGTTATTGATTAGCTTTTTCTGTAAGAGCAGAAGCAGATGGATCATTTCACATCCTTTGTAAGTGATGTATTTTCAGGGGGGTGGGACGGGAAGGAATGGGGGCGGGCACATGAAAGGTATTGCATTTGTGAATAaaagttttgttgttttgtaccacttgaattattttatttctgtgcatgtgtACTATGCTTCTGAAAAAGCTTTTGCTTTTGCTCCAAATTTACTTTAATCTCGGACagagataacctgagtaaatgtttaaagattgttttttaaatgataatttcttttatt
>XM_022681992.1
ATGGCGGACTCGGTAGCGGCGGGGCTGGGAGAGGAGAAGGAGGCCGAGAGCGGGGAGAGCGGGGAGAAGGAGCGGGAGAAACGGGCCGCCTGCGGAGCCGCCAGGCCGGACACGGGCAGCGGCGCCTCGGAGCAGACCGAGACCCTCGGCTTCTACGAGAGAAAGGCAAAGAAGGCGGACGGCCGGCGCAGTGTGTCCGATCTGTCTCTGGTGAGGTTCGTCAGTGCTGAGCTGACCAGAGGATATTTTCTGGAACATAATGAGGCCAAATAcactgagaggagagagagggtcTATACCTGCCTCCGCATTCCCAGAGAACTGGAGAAGctgaTGGTGTTTGGGTTCTTCCTGTGTCTGGATGCGTTCCTGTATGTCTTCACCCTGTTACCCCTCAGAGTGTTGCTGGCGCTCATCAGACTGCTCACACTGCCCTGCTGTGGGCTCAGcggtTCTCGTCTCCTGCAGCCAGCTCAGGTGTGTGATGTTCTAAAGGGGTTTATCATGGTGCTGTGTTACTTCATGATGCACTACGTGGACTACTCCATGATGTACCACCTGATCCGGGGACAGTCTGTGATCAAGCTCTACATCATCTACAACATGCTGGAGGTGGCAGATCGGTTGTTCTCGTCGTTTGGGCAGGACATTCTAGACGCTCTGTACTGGACCGCCACCGAGCccaaagagaggaaaagagccCACATAGGAGTGATACCTCACTTCTTCATGGCTGTCCTTTACGTCTTTCTTCATGCCATTCTGATCATGGTTCAAGCCACCACCTTAAACGTGGCATTCAACTCTCACAACAAATCCCTGCTTACCATCATGATGTCCAACAACTTTGTTGAGATTAAGGGAAGTGTGTTCAAAAAGTTTGAGAAGAATAACCTCTTTCAGATGTCCAACAGTGataTTAAAGAAAGATTCACAAACTATGTGCTGTTATTAATCGTCTGCCTCAGAAATATGGAGCAGTTCTCCTGGAACCCAGATCATCTGTGGGTGCTGTTTCCGGATGTGTGTATGGTGATTGCGTCGGAGATTGCTGTGGATGTGGTGAAACACGCTTTCATTACTAAATTTAACGACATCCCAGCAGATGTGTACGGGGAATACAGAGCGAGCCTGGCATTTGATCTGGTCAGCAGCAGACAGAAAAACgcgtATACAGACTACAGTGACAGTGTGTCCAGAAGAATGGGATTcatccccctccccctcgcttTACTGctGATCCGGGTGGTGACGAGCTCGGTGAAGGTGCAGGGGGCGCTTGGCTTTGCGTGTGTGGTACTCTTTTATTTGGGTATGATCACACTAAAGGTGCTGAACAGCATCGTGCTGTTGGGGAAGTCGTGTGTTTATGTGAAGGAAGCAAACATGGAGGAGAAGCTGTTCCAGTCTCCCCCCTCCGCTGCCCCTAGCAGAGCATCCAGCAGAGCTCACCGGACCAAATACACGCGGGAACCAGCGGGTGAGTCTGCAGACGAGGGTGCATCTGCATCAATCATCACCCAGCCCTCCCACCAGCCGGAGTACACTGCCTCTAATCTCCCGACCAGCGAATCGGATCAGTTCCTCACTACGCCGGACGAGTCTGAGGAGAAGATCCTCACTCAGGACGGAACAGAACTCGTACACAGAGCTCCTAAAAAAGACCTGCTGGAGATCGACCGGTTTACCATCTGCGGGAACAGAATCGACTAAATCACCAACGCTTAGAGACATGCTTTACATGCTGGTGTTCAGAGAGTGACGAGAGCTGGGGCGACAGGGATGGACTGTTATATCCCCCAGTCTAACCAGCTCGATTTTATTTACCCTTGACCCTGGAGCTACTGGATCCGGGTAGAAAGGAATCGTGGGATATTTATTAAGAAGTGCATATAATTTATTGAAGCTGcagactaaaacacaaacacacacacttactacacacacattagacAACCTTACTTTTCTTTCTATACTCCCTCATTCTAAACTCATGGATCCATATTTGCTCGGATAAAAATTGAAGTAAGCCTTGGACTTAGAACTGAGATGGTTGCCTGGTTGCTTTGCCGTCCTGATGGggaagaagaaagaaatgaagaaagaaagagaaagagcgagtgagtgagcgagtgagcgTGCgcgggagggagagagggagagggagagatagagggagagagagacttagaaaaaaagtatatagaCTCACTTCAGATAGAGAATAAGGTCTACGTTCCCACAGCAGGTAAAAGCAacccaaatctgatctttttgaTCATACGTGGTACaggtgtgttctctgtgtggcagtgtgaacaCTGAATCTGATTTGGTTTTGAAATCCAATACATATCCAATAAACAACAATGTGTCTCAGACTGTACAACcagatcagaattcatgcaatatttttttttcttcatcaagGAAAAGGAACATAATGCATTAATGAGAGGGAAAATGGACGACAGCAGTGAGTGAGGGGATCAGTGGTGGGATAGTGTTTGGGTCACAACTGCTCtgtgtttctaatgaaatggCCGAACGCAGCCATAGgacagcactgctgcagtttcAAAGGCCATTAAAAGCCTAAATACAAagttaaacaaaaacacaaactaacGAAGTGGACGTGTCCGAATGACGTGTCCTTTTTACAGCAAGGTTGAACATATTCTCTGTGATGAGCCCAGCTGCAGACACTGAAACTGCTTGATAGCTCCTGTGATGCTGGGGAAGATGAAACCAAATCTTTACATGAAGCTTTGCTACTTGGTGCATAAGCATCAGTTTAGCAGAGTGAATTGTTCTGACCAACATCAGATGTACAGTagatcacaataaaaaaagagagtcCAAACAGCCTAAAATGATCAACAGACTTCAACAGAGAAACTcgtttacctgctgtgtgaacgtagcaTTTTGTATCGTGTCTTGTGACAAACACGGATGCTAACCTGAAGAATCTGCAGGTGTGAACTGAGTATAAAGCGAGGTCTGTGAGGAGTGGTTTAAAATGTGACTTTTCTTCATGCATGCATTTTCCATAGAGGtgaatttttacattatttcagtTGTTCAGATTGTGTGAAATGCTCCATTCTCTCAGAATTCTATACagtagtagtggtggtggtgatggaggTGATGGATTTTTACCAGACGTGCCAGAGTTTATTACTTAATAGATCAGGTCCATGATAATGTGAAACTATTGGTAATGAAATGGTAAAGAATACACTGCCTGATGCCTCAGACTGTTTTACTATCATTTTTTTTGGGAAGGTTCTGTCCTAAAACCACGGTAGTTCCCTTAGAAAACCTATTTTTATATTAGCTACAATTTTTACTGTATCAtcacacttaaaaaatatatcacataAAATGATAGTATAGTATTTATTAGGCCATATTTGTGCTGTAAATGTTACAACCCCCACTTCTCATCACATAACATTTTTGTTACTGTGAGCAACTTTACATCACACCACTCTGGAGACATCCCAGTGATGTCATTATTGGATTCCCTCTACAGGCTCACTACACATATTTTCACATTGATGATGGCACTGAGACCCTCGTAATTCCTCAAAAGCTACACGGGACATATCAGTGAAGTGTGTAGAGCAGTTTAGCTCTGTAAGTTTGTAAAGCACTGGTGTGTAAATTATAGCCAGGGTATCAAACAATgacttgtgtttttgtgtttttttttttattattattgtgaagcTAAAACGTGGTAATTCTGATTTTATCAGGTAGTTTTTATGCTCTGATACAGACTTCATTTATGATCAACCTTGATAAATCCATTCATTATAATTTAATGCCTGTGAATTGCAGACTAGCTCTTTAATAAGATTTTTATAGTATTAGTATTTTGTACGAACATGATACATGATAGAGATGCAGTGCAGAACACTATAGGCAAAGTCCAATAAATCATAATCATTCCTTTTGGTAATTTTACTTAAggaatatcatatatatatgtgtgtatgctCCTGGATAAATAAGTCACTCAGTACTGGATACAGTTGGTGCATGTTCAGTTATGATCAAATGTCTTAAAGTTGTGTAACTGTTTAAATGCTTGATCATATTCTGTACATTATTTGTTGTTAGTTCCTGtagaccaggggtcggcaattagttTTGGCCGCGGGACAGATATTTTTCAAGCTGTTATGTGGTTTTTGGGAAAAAAGGcgttataaggagatagggagcccaagaacgggcggaaaaagcGAGACTGAGGAGATGTGTAAACTAAAGTTTACCAAAgaagagttttattttttatttattttattatcattcgatatagttcaaacaacctcacgggccagacgTTTCACGCttggccgcctattgccgacccctccTGTAGACAATCCAgttttagctcttttttaaaaaatgaaatatgcactgatcagccataacattaaaaccacctcacTAATATGTAGGAATGCACCGGTTTGGGAATTCTGGGCTGATatagatacaaaaaaacaataaaaatacgaATTTTGGTATCACTGTGCAACCCTAAAAATATTTCCTAATCCATCAGTCAGCTTTCTTAGTCATGTGACCGATGCACTATGCCAAACCAATCACAAGCTCGACCAATTACAGATTAGGCCTGTTTATTTCAGAAAATTCTAGCTGTATTATTatgtttcttattatttatcCAGGAGTTCTGCTCTTCCGTTTGTTTGACTGCCTGTAAAGTTGATTTTGCTCTGTTTAAATAGCGTCACTCCAAAAACATCCTGATTCGACATTTAATATAGTATTATTTTAGACcaccttaataataaaaaaatatatgtgaacATATGGACTGAAAAATGCACTTTAGTTTACTAAATCAAACTATATTTCAGTTTATGTGGTTAcatgaacaaaaaatatatatcatacatTATAACATGGGTATGGGTAGCTCCTCAGTCTTTAAGATTCTTATTTATTGATCTAGTTTACTGAGTGGTTCTGACCTATGGGTgaattaaaattagttttttttttttttaatctttaaagaTGAAATAAATCTTTCTGATTTTTGGTGCTTATAATAACAGCTTATAGGACTGAATATCTAGAGAAGTACTATGGAAATAcaaagctttcatgtttaaaacaaacattagGATTTTCTTGAAAAATGTTGGCATTGCtcttgtttccttttttcttttctcattttaatttttcaaacttcagtgtgttttttgaaGGAGTAAGACTTCATAATACATGCATAagtataaaatagatatttaataaaaataaaataaaaataactgacatgccaaaagtcatgggacagcagtgtgtattttaataatgaagTTTTgccttgggaatgcccacacctgtattgTAAGTTGTGAGTGATGTTggacactggccagcatgctcatggcaaggccaggtgaattatgggagtgcGGCCTAATAGTCAGTGCCAGAAGGAAGGGACGTTTAATTTTTGAAGTTGTGTGGGCGTTTAATATTCCTATCAGTCATAGAAGTTATATaagtcatagaaggcattaccacccacagtggacagtgtacTGAGTTGCTTTTGTCTAGAACTGC

Function

symbol description
tapt1 Predicted to enable growth hormone-releasing hormone receptor activity. Involved in positive regulation of cilium assembly. Located in centrosome and ciliary basal body.

NR:

description
PREDICTED: transmembrane anterior posterior transformation protein 1 homolog

GO: NA

KEGG:

id description
K23404 TAPT1; transmembrane anterior posterior transformation protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU250424 False 2070 lncRNA 0.34 2 15309509 15340580
XM_022681992.1 True 5637 mRNA 0.42 15 15310640 15330982

Neighbor

gene id symbol gene type direction distance location
LOC103042179 NA coding downstream 5594 15265108 ~ 15303915 (-)
LOC103043225 NA coding downstream 47991 15259377 ~ 15261518 (-)
LOC103042598 crgm2,LOC103042598,LOC108427435,LOC108427436,LOC108260664,LOC108260584,LOC108260580,LOC108441183,LOC108260581 coding downstream 968911 14338714 ~ 14340598 (-)
LOC103033946 tyrp1,tyrp-1,LOC108260967,LOC105903131 coding downstream 1101823 14200223 ~ 14207686 (-)
lurap1l lurap1l coding downstream 1110912 14187676 ~ 14198597 (-)
LOC103041363 qdpr,dhpr,qdprb1,LOC108437732,LOC107750446,LOC107702409,LOC107562607 coding upstream 26529 15367109 ~ 15372437 (-)
LOC103043828 LOC108437730 coding upstream 87813 15428393 ~ 15560832 (-)
rfc1 rfc1,LOC102787736 coding upstream 275514 15616094 ~ 15630005 (-)
rpl9 rpl9,LOC107671920,LOC107700291,LOC107709470 coding upstream 291674 15632254 ~ 15637092 (-)
ugdh ugdh,LOC107757604 coding upstream 304558 15645138 ~ 15659566 (-)
LOC103043324 NA non-coding downstream 256639 15047747 ~ 15052870 (-)
LOC111195232 NA non-coding downstream 307936 14953444 ~ 15001573 (-)
G184447 NA non-coding downstream 972868 14335946 ~ 14336641 (-)
LOC111195216 NA non-coding downstream 1124165 14180105 ~ 14185344 (-)
G184422 LOC104965148,LOC104966956,LOC103385808 non-coding downstream 1178414 14128528 ~ 14131095 (-)
G184818 NA non-coding upstream 32192 15372772 ~ 15379206 (-)
G184816 gtf2e2,LOC107671915,LOC107548363 non-coding upstream 44134 15384714 ~ 15387101 (-)
LOC111195235 NA non-coding upstream 72087 15412667 ~ 15419207 (-)
G184836 NA non-coding upstream 224042 15564622 ~ 15564883 (-)
G184853 NA non-coding upstream 320087 15660667 ~ 15664885 (-)
LOC103032041 NA other downstream 1193053 14063644 ~ 14116456 (-)
trnas-gcu_6 NA other downstream 1217919 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 1219722 14089706 ~ 14089787 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other downstream 1269264 13988809 ~ 14040245 (-)
LOC111195226 NA other downstream 1714756 13551132 ~ 13594753 (-)
smim18 smim18 other upstream 36078 15376658 ~ 15381208 (-)
smim14 smim14 other upstream 325531 15666111 ~ 15671954 (-)
lrat lrat other upstream 1557598 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 1889505 17230085 ~ 17241027 (-)
G185295 NA other upstream 1911687 17252267 ~ 17254633 (-)

Expression


Co-expression Network