smim18 (smim18)


Basic Information

Item Value
gene id smim18
gene name smim18
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15376658 ~ 15381208 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU250431
agagagtgagagaaagagtgagtgagcacaagagagagacatacagtgAAGCGAAGGGACACAAAcagaagaaaacaagaaaaagagagaacgagagaaaaagagagaacaagagaaagagagagagcgatagaaagagagagaggcaggaagGGCGAGCCACATAGGAAGTGAGTGGGCTGGCAGTACCAGCATCCTCAGCATCCTACTAAGACACACAGGTCAGTATGAGCGTATCCAGCAGTGGCACTGCACTGGGGCAGCAGGTTTATCCGTTCCATGACGGTTGGAACATCGCCTGCTTCATCATCCTCCTGCTCTTCATCCTCACGGTCCTGTCCCTCGCCACACTGGCATTCCTCTACGAGCTGCTGGACTGCGGCTGCTTCGCCAAGACCAAAACCAACCGCGACAGACGCAGCCAGAGCGAGGAGGTAGTGTAGACAATACAGACACAACGGCAGGAGAGGAAAGCAGGCCAACAGCATGACTAATGAACCGGGAGAAGCGGCGCTATCATGGAATCATGAGATAAGAGACAGACTGGACAGTATT
>XM_007230207.3
ttccatcatcagAAAAAGGTTCATGATCAGTTCTCTGTCATTTATCGGCTCTTAACAGTCTTTACAGCATCCTTATTAGATTAACAGTCAACGATCATCAATATTTGATTACACTGCCCACTCACCCAGCCCTCTGTATATGACAAACACCCCACGCCCACCACCCCATTAAACcagaggacagccaatcagagcagccCCCATAAATCATTCATCCAGACTGAGGGTGGGCCACCTGCAGAGCAACAGCCAATAAGGTTGGTCTTTgtgctgtgtgatggtgaaaTTAGCCAATGGCGTAACAGAAGCTAAAGCTAGCCTGTTTATACTGCAGGGAGGggcagaaggagagagagagaaagagagagtgagagaaagagtgagtgagcacaagagagagacatacagtgAAGCGAAGGGACACAAAcagaagaaaacaagaaaaagagagaacgagagaaaaagagagaacaagagaaagagagagagcgatagaaagagagagaggcaggaagGGCGAGCCACATAGGAAGTGAGTGGGCTGGCAGTACCAGCATCCTCAGCATCCTACTAAGACACACAGGTCAGTATGAGCGTATCCAGCAGTGGCACTGCACTGGGGCAGCAGGTTTATCCGTTCCATGACGGTTGGAACATCGCCTGCTTCATCATCCTCCTGCTCTTCATCCTCACGGTCCTGTCCCTCGCCACACTGGCATTCCTCTACGAGCTGCTGGACTGCGGCTGCTTCGCCAAGACCAAAACCAACCGCGACAGACGCAGCCAGAGCGAGGAGGTAGTGTAGACAATACAGACACAACGGCAGGAGAGGAAAGCAGGCCAACAGCATGACTAATGAACCGGGAGAAGCGGCGCTATCATGGAATCATGAGATAAGAGACAGACTGGACAGTATTCAGTGGACTGTTTGAGCTCCTGTTAACCAATAAATGTACAAGTCTGTAAAAACAGAATAGCTtgcattatttttctttgttctatATTTGGAGCGCAATATCAGCATGTTTGCGGTTTAATAACATATATACCATAAGTTACAATGATACTGGAAACTTAGAAACATGATAGAATAGACATCTAATGAGATTTTCATTAATAACAACTATCCTTTACTTTTCAAAAAGACCTGATTAACATGAAGGAGCCTGTGCGttgaatcattttatttatgtttaatttatttatgatatttaaacattttacattgcaatGACAATGTCTGAATATTCCTAAAGCaatagttattgtaaaaggcCTAATAATGGTTTTGCTTCTGACTCCCTACCCATTACTAAACACAAGAATGGGGCCACCTGTAGATATCCCACTTATGCATGGTTtaaaatgtgtctttttttgGTGAGTACAGTCAATTTGCCACAGGTTCTATAAATTAGCTTCTTCAACCTTCATGTTTTCCTGAAGCTACAGAATAAAGgtgtttttatttgcagaacagtTCAGCAGTGGGGTCCTATGTCTAAGAATTTATACTGAACTGATAACAGTTAACAGTGAACAGAGCACATGATTATGATCAAGACAATTCTGGTACCATactttaattgattaattaggttataataaaaattacctAAATACTGa
>XR_452782.3
aaaaacagaaaaaagagggGAAGACGGAACATTAATATAAGACAATTGTAAAGCCTTTTAAAAACACCAGGATTTTATCCTGATCTGATGTTAGGTAGGTCTAGAAACACCAAAAATATAATTCTATGTAGGAAACACATTTTATGTTTCTACAAATATAGCTGTCATTATGCTATATTAATCAGActttaaatctatttatttcACTAGTGAATATGTATGATGTATTTCACTGCATGTTGATTTTTCCCTTGTCAAGCAGGCAATAAAACTTTGAAATTACATTGACTACAGTGATACTCCGTTATAATACAACATTGTATTgtaaaaagttaattaatgacctataataaactgtttttactgtaaaaatgaatataaatcatttttcaggatttttttttccatcatcagAAAAAGGTTCATGATCAGTTCTCTGTCATTTATCGGCTCTTAACAGTCTTTACAGCATCCTTATTAGATTAACAGTCAACGATCATCAATATTTGATTACACTGCCCACTCACCCAGCCCTCTGTATATGACAAACACCCCACGCCCACCACCCCATTAAACcagaggacagccaatcagagcagccCCCATAAATCATTCATCCAGACTGAGGGTGGGCCACCTGCAGAGCAACAGCCAATAAGGTTGGTCTTTgtgctgtgtgatggtgaaaTTAGCCAATGGCGTAACAGAAGCTAAAGCTAGCCTGTTTATACTGCAGGGAGGggcagaaggagagagagagaaagagagagtgagagaaagagtgagtgagcacaagagagagacatacagtgAAGCGAAGGGACACAAAcagaagaaaacaagaaaaagagagaacgagagaaaaagagagaacaagagaaagagagagagcgatagaaagagagagaggcaggaagGGCGAGCCACATAGGAAGTGAGTGGGCTGGCAGTACCAGCATCCTCAGCATCCTACTAAGACACACAGCTCCGATTCAATTCCTACATTAAATCCTCTCCTTTTAACTCCTccatgaatttattttatattcaattcCTCTATCAATCTTTTTCCCATTCAATTTATTCACCAATACCACCCACCCTCATTCAACTCCTCAATCTTTTCCTG

Function

symbol description
smim18 Predicted to be integral component of membrane.

NR:

description
PREDICTED: small integral membrane protein 18

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250431 False 555 TUCP 0.52 2 15377367 15380444
XM_007230207.3 True 1626 mRNA 0.42 2 15376658 15380806
XR_452782.3 False 1129 misc_RNA 0.38 2 15377708 15381208

Neighbor

gene id symbol gene type direction distance location
LOC103041363 qdpr,dhpr,qdprb1,LOC108437732,LOC107750446,LOC107702409,LOC107562607 coding downstream 4221 15367109 ~ 15372437 (-)
LOC103041667 ldb2b,LOC108434309,LOC107562611,LOC107750444,LOC108260957,LOC107548319,LOC107671914,LOC107702407 coding downstream 24372 15332135 ~ 15352286 (-)
LOC103042179 NA coding downstream 72743 15265108 ~ 15303915 (-)
LOC103043225 NA coding downstream 115140 15259377 ~ 15261518 (-)
LOC103042598 crgm2,LOC103042598,LOC108427435,LOC108427436,LOC108260664,LOC108260584,LOC108260580,LOC108441183,LOC108260581 coding downstream 1036060 14338714 ~ 14340598 (-)
LOC103043828 LOC108437730 coding upstream 47185 15428393 ~ 15560832 (-)
rfc1 rfc1,LOC102787736 coding upstream 234886 15616094 ~ 15630005 (-)
rpl9 rpl9,LOC107671920,LOC107700291,LOC107709470 coding upstream 251046 15632254 ~ 15637092 (-)
ugdh ugdh,LOC107757604 coding upstream 263930 15645138 ~ 15659566 (-)
pds5a pds5a,LOC107757607 coding upstream 303608 15684816 ~ 15707540 (-)
LOC103043324 NA non-coding downstream 323788 15047747 ~ 15052870 (-)
LOC111195232 NA non-coding downstream 375085 14953444 ~ 15001573 (-)
G184447 NA non-coding downstream 1040017 14335946 ~ 14336641 (-)
LOC111195216 NA non-coding downstream 1191314 14180105 ~ 14185344 (-)
G184422 LOC104965148,LOC104966956,LOC103385808 non-coding downstream 1245563 14128528 ~ 14131095 (-)
G184816 gtf2e2,LOC107671915,LOC107548363 non-coding upstream 3506 15384714 ~ 15387101 (-)
LOC111195235 NA non-coding upstream 31459 15412667 ~ 15419207 (-)
G184836 NA non-coding upstream 183414 15564622 ~ 15564883 (-)
G184853 NA non-coding upstream 279459 15660667 ~ 15664885 (-)
G184854 NA non-coding upstream 283970 15665178 ~ 15665714 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 36078 15309509 ~ 15340580 (-)
LOC103032041 NA other downstream 1260202 14063644 ~ 14116456 (-)
trnas-gcu_6 NA other downstream 1285068 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 1286871 14089706 ~ 14089787 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other downstream 1336413 13988809 ~ 14040245 (-)
smim14 smim14 other upstream 284903 15666111 ~ 15671954 (-)
lrat lrat other upstream 1516970 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 1848877 17230085 ~ 17241027 (-)
G185295 NA other upstream 1871059 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 1914293 17295501 ~ 17300782 (-)

Expression


Co-expression Network