G184816 (gtf2e2,LOC107671915,LOC107548363)


Basic Information

Item Value
gene id G184816
gene name gtf2e2,LOC107671915,LOC107548363
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15384714 ~ 15387101 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU250440
tccatttaaagttttattctaaaacaaaaaagaggatTCAACATATTCCTCAAAGCACTGGCACAAAAAtataagcaaataaaataaagaaactatGTACAGTCAGTTCACATTTGTACGGTGTCTCTGTTAGTCCTCTGGTGTGTCTGACTGTGGGTTTGGCAATTAGACCGGTCTGATCAGATACACAGTGCACTGGAGAAAACGCACGCGTCCGTCCTCGCTGTCCGAGTCTTTTTCTGCAGTACTGAGCCGTTACGACACGTCAGAATCACTTCTTGGCGGGAACACCTTCTGAGTAGTCCTCCAGAACTCCGTTCAGATGGTCGTTGTGGGTCTTGAACCGTCTCTTCTTCTGTGCACCCGGCTTCTTCCTCTTATGCACCGGGATCATTTTCTTTGGTCCTGTCTCCTGCATGGATGAGATGCCCTGTCTCTTCAGGTAATCTTCAATTTTTTCTTCATCTATGGAATCCACAGGAACGCTTCTCCACAGCTTCTGGAACTCTTCATCCACCTCAAAATGGCAGTGTTTGTCATTGTAGAAAAGGATCTTCTTCTTGTCTGGTCTCGTCACGAATAAGATCTGATCACCTAAAGCCTtaATAGCTTTGGCAGCATTGGGCAGGCCCTCCTCCACGTCATCCAGCAGCACACCACCTAAACCCTGCTGGTCATGTCTATCCAACAATCTGACCAGAGCTTTCTTGTCTTTCAGATGGTATTTGGGTTTAAATGCATATTTCCCATCTCGAGTGTCTATTTTAGGATTACTCGCC

Function

symbol description
gtf2e2 Predicted to enable DNA binding activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIE complex. Human ortholog(s) of this gene implicated in nonphotosensitive trichothiodystrophy 6. Orthologous to human GTF2E2 (general transcription factor IIE subunit 2).

NR:

description
PREDICTED: transcription initiation factor IIE subunit beta

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250440 True 779 lncRNA 0.45 4 15384714 15387101

Neighbor

gene id symbol gene type direction distance location
LOC103041363 qdpr,dhpr,qdprb1,LOC108437732,LOC107750446,LOC107702409,LOC107562607 coding downstream 12277 15367109 ~ 15372437 (-)
LOC103041667 ldb2b,LOC108434309,LOC107562611,LOC107750444,LOC108260957,LOC107548319,LOC107671914,LOC107702407 coding downstream 32428 15332135 ~ 15352286 (-)
LOC103042179 NA coding downstream 80799 15265108 ~ 15303915 (-)
LOC103043225 NA coding downstream 123196 15259377 ~ 15261518 (-)
LOC103042598 crgm2,LOC103042598,LOC108427435,LOC108427436,LOC108260664,LOC108260584,LOC108260580,LOC108441183,LOC108260581 coding downstream 1044116 14338714 ~ 14340598 (-)
LOC103043828 LOC108437730 coding upstream 41292 15428393 ~ 15560832 (-)
rfc1 rfc1,LOC102787736 coding upstream 228993 15616094 ~ 15630005 (-)
rpl9 rpl9,LOC107671920,LOC107700291,LOC107709470 coding upstream 245153 15632254 ~ 15637092 (-)
ugdh ugdh,LOC107757604 coding upstream 258037 15645138 ~ 15659566 (-)
pds5a pds5a,LOC107757607 coding upstream 297715 15684816 ~ 15707540 (-)
G184818 NA non-coding downstream 5508 15372772 ~ 15379206 (-)
LOC103043324 NA non-coding downstream 331844 15047747 ~ 15052870 (-)
LOC111195232 NA non-coding downstream 383141 14953444 ~ 15001573 (-)
G184447 NA non-coding downstream 1048073 14335946 ~ 14336641 (-)
LOC111195216 NA non-coding downstream 1199370 14180105 ~ 14185344 (-)
LOC111195235 NA non-coding upstream 25566 15412667 ~ 15419207 (-)
G184836 NA non-coding upstream 177521 15564622 ~ 15564883 (-)
G184853 NA non-coding upstream 273566 15660667 ~ 15664885 (-)
G184854 NA non-coding upstream 278077 15665178 ~ 15665714 (-)
G184863 NA non-coding upstream 334206 15721307 ~ 15722297 (-)
smim18 smim18 other downstream 3506 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 44134 15309509 ~ 15340580 (-)
LOC103032041 NA other downstream 1268258 14063644 ~ 14116456 (-)
trnas-gcu_6 NA other downstream 1293124 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 1294927 14089706 ~ 14089787 (-)
smim14 smim14 other upstream 279010 15666111 ~ 15671954 (-)
lrat lrat other upstream 1511077 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 1842984 17230085 ~ 17241027 (-)
G185295 NA other upstream 1865166 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 1908400 17295501 ~ 17300782 (-)

Expression


Co-expression Network