LOC111195235


Basic Information

Item Value
gene id LOC111195235
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15412667 ~ 15419207 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU250446
aataaaaagtgattgacaacgaaagtgtagtatctgattggctgcagtcgaaaatgattgacacatgctccgccctttagccacgcccaccGTGGGCTCCGGTCTGCGCATTTCATAGATGGAATATGGGTGCAGCGTTACGGCTGCGTCACCGGCGTTACGTAAGCACGCAGCCCTCGCCTCGAGCTCCAGCAGGctaatataaataatgatttatttatgttcaggAGAGAAACTGCGGCGGAGCTGGAGGAACAGCAGCTCACCTGAGAGGAGCTTCAGACCGGCCCTGAGGTGCCGGTAACGAGGGACATGATGGAGGGGAGGAAGCCTAATAACGATTCATCTCCTGTCATCGCTAAGCCTGCAATGCACTTGACTTCTGACCACAAAGAACAGCAGATTCAGAAGACACAAGATGCTAAGAGAGCAATTCCagatagagagaagagaagagcagTGAAGTCAGGTCCTGAAACACCAGCCAGCGTTCTCAAAAACAAAGGTGCCACAAAGGGTTTTCTGAACaactttcagttttattttttaatgggaTGTGAGTGTGAAGAATTTTTACCCTGGTAAAGAACCTTTATGTATAGTTAAGAGAAAATTAAACAATGTGACTCGTTCTTAAAGTTACTGtgtaccttattttattttactgttaaaagtttCTCATCTTCAAGTGCCTAACAACTTTCAGAAGATCTGATGGACCTGGTGGAGCAGTTCGAGCTCTAATCATGTGGAACATCATGCTTATGCACTTTCTGAAACCTTGCTTTTTAAGTGtggcctaaaaaaaacaaagtaaagaaaaac
>XR_002651558.1
AGATGGAATATGGGTGCAGCGTTACGGCTGCGTCACCGGCGTTACGTAAGCACGCAGCCCTCGCCTCGAGCTCCAGCAGGctaatataaataatgatttatttatgttcaggAGAGAAACTGCGGCGGAGCTGGAGGAACAGCAGCTCACCTGAGAGGAGCTTCAGACCGGCCCTGAGGTGCCGGTAACGAGGGACATGATGGAGGGGAGGAAGCCTAATAACGATTCATCTCCTGTCATCGCTAAGCCTGCAATGCACTTGACTTCTGACCACAAAGAACAGCAGATTCAGAAGACACAAGATGCTAAGAGAGCAATTCCagatagagagaagagaagagcagTGAAGTCAGGTCCTGAAACACCAGCCAGCGTTCTCAAAAACAAAGGTGCCACAAAGGGTTTTCTGAACaactttcagttttattttttaatgggaTGTGAGTGTGAAGAATTTTTACCCTGGTAAAGAACCTTTATGTATAGTTAAGAGAAAATTAAACAATGTGACTCGTTCTTAAAGTTACTGtgtaccttattttattttactgttaaaagtttCTCATCTTCAAGTGCCTAACAACTTTCAGAAGATCTGATGGACCTGGTGGAGCAGTTCGAGCTCTAATCATGTGGAACATCATGCTTATGCACTTTCTGAAACCTTGCTTTTTAAGTGtggcctaaaaaaaacaaagtaaagaaaaacgtttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250446 True 825 lncRNA 0.44 4 15412674 15419207
XR_002651558.1 False 716 lncRNA 0.43 4 15412667 15419091

Neighbor

gene id symbol gene type direction distance location
LOC103041363 qdpr,dhpr,qdprb1,LOC108437732,LOC107750446,LOC107702409,LOC107562607 coding downstream 40230 15367109 ~ 15372437 (-)
LOC103041667 ldb2b,LOC108434309,LOC107562611,LOC107750444,LOC108260957,LOC107548319,LOC107671914,LOC107702407 coding downstream 60381 15332135 ~ 15352286 (-)
LOC103042179 NA coding downstream 108752 15265108 ~ 15303915 (-)
LOC103043225 NA coding downstream 151149 15259377 ~ 15261518 (-)
LOC103042598 crgm2,LOC103042598,LOC108427435,LOC108427436,LOC108260664,LOC108260584,LOC108260580,LOC108441183,LOC108260581 coding downstream 1072069 14338714 ~ 14340598 (-)
LOC103043828 LOC108437730 coding upstream 9186 15428393 ~ 15560832 (-)
rfc1 rfc1,LOC102787736 coding upstream 196887 15616094 ~ 15630005 (-)
rpl9 rpl9,LOC107671920,LOC107700291,LOC107709470 coding upstream 213047 15632254 ~ 15637092 (-)
ugdh ugdh,LOC107757604 coding upstream 225931 15645138 ~ 15659566 (-)
pds5a pds5a,LOC107757607 coding upstream 265609 15684816 ~ 15707540 (-)
G184816 gtf2e2,LOC107671915,LOC107548363 non-coding downstream 25566 15384714 ~ 15387101 (-)
G184818 NA non-coding downstream 33461 15372772 ~ 15379206 (-)
LOC103043324 NA non-coding downstream 359797 15047747 ~ 15052870 (-)
LOC111195232 NA non-coding downstream 411094 14953444 ~ 15001573 (-)
G184447 NA non-coding downstream 1076026 14335946 ~ 14336641 (-)
G184836 NA non-coding upstream 145415 15564622 ~ 15564883 (-)
G184853 NA non-coding upstream 241460 15660667 ~ 15664885 (-)
G184854 NA non-coding upstream 245971 15665178 ~ 15665714 (-)
G184863 NA non-coding upstream 302100 15721307 ~ 15722297 (-)
G184865 NA non-coding upstream 307157 15726364 ~ 15726622 (-)
smim18 smim18 other downstream 31459 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 72087 15309509 ~ 15340580 (-)
LOC103032041 NA other downstream 1296211 14063644 ~ 14116456 (-)
smim14 smim14 other upstream 246904 15666111 ~ 15671954 (-)
lrat lrat other upstream 1478971 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 1810878 17230085 ~ 17241027 (-)
G185295 NA other upstream 1833060 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 1876294 17295501 ~ 17300782 (-)

Expression


Co-expression Network