smim14 (smim14)


Basic Information

Item Value
gene id smim14
gene name smim14
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15666111 ~ 15671954 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU250482
acacacacacacacacacacacacaccgggcCGGATTCAGCTCGCGCCTCCGCCAGCGCCCTCCGTTAGCACGCCGGGGTGAGGGGCTGGATGTGAGCGGTTTAGCTGAGGGTCTGCAGTCCGCGGTCAGGGGTCTCCACACCTCCACTTCACCTGACCACAaaGCAGGATGGCAGAGGGCGGGTTTGACCCGTGTGAGTGTATCTGCTCTCATGAACACGCTATGCGGAGACTCATCAACCTGCTCAGGCAGTCCCAGTCCTACTGCACAGACAATGAGTGCCTTCAGGAACTTCCAGGACCCGGTGCTTCTGCTGGGGAGGATTTAACTGTGTTTATGATTATTATGGGCTGGGTGGTGTTGGCTGCCATCCTCTTCTTACTGCGTCCCGCCAACATGAGAGCACCACAGACCTGCAACAATTCTACAGGCCCCGCTGCAAATCACCGCAGAGAACCCCCAGCGCCTCCAGTGGACTAACAGGACTAGATCACCGGGCTTCTGAGATCTGATCTGATTTGTTCTCATGATAAAATCGTTGACcactgacctctgacctctgacctgcGCTGTGGATATGGTTACCAATTTAGTTAGTTAAATGTTACTGTTTCTGGGTCTGACTTTTATcagttattatttctttttgtgttttttttttaaccctctaAGCTTTCTTAACTGTTTTTGTCTGGATTTCTGTGGGTGGAGAGTAGAGATGCGTATAAGCAAGAATTTATGTACTTAATGATACGTACAGTATCACGATACAGAGGTTACAAttcataatataacaatatattataagcatggcaatatattgtttaaatcaatattttggggAACTCCCatgttataaaaacacattcttgtattattaattaatctgaAAACGAAAAAGAAAAGTCTACTTTTTAGGTATTTATATCAATAATCCTTATGTTTTTATAACAAT
>XM_007230224.3
acacacacacacacacacacacacacacacacacacacacacaccgggcCGGATTCAGCTCGCGCCTCCGCCAGCGCCCTCCGTTAGCACGCCGGGGTGAGGGGCTGGATGTGAGCGGTTTAGCTGAGGGTCTGCAGTCCGCGGTCAGGGGTCTCCACACCTCCACTTCACCTGACCACAaaGCAGGATGGCAGAGGGCGGGTTTGACCCGTGTGAGTGTATCTGCTCTCATGAACACGCTATGCGGAGACTCATCAACCTGCTCAGGCAGTCCCAGTCCTACTGCACAGACAATGAGTGCCTTCAGGAACTTCCAGGACCCGGTGCTTCTGCTGGGGAGGATTTAACTGTGTTTATGATTATTATGGGCTGGGTGGTGTTGGCTGCCATCCTCTTCTTACTGCGTCCCGCCAACATGAGAGCACCACAGACCTGCAACAATTCTACAGGCCCCGCTGCAAATCACCGCAGAGAACCCCCAGCGCCTCCAGTGGACTAACAGGACTAGATCACCGGGCTTCTGAGATCTGATCTGATTTGTTCTCATGATAAAATCGTTGACcactgacctctgacctctgacctgcGCTGTGGATATGGTTACCAATTTAGTTAGTTAAATGTTACTGTTTCTGGGTCTGACTTTTATcagttattatttctttttgtgttttttttttaaccctctaAGCTTTCTTAACTGTTTTTGTCTGGATTTCTGTGGGTGGAGAGTAGAGATGCGTATAAGCAAGAATTTATGTACTTAATGATACGTACAGTATCACGATACAGAGGTTACAAttcataatataacaatatattataagcatggcaatatattgtttaaatcaatattttggggAACTCCCatgttataaaaacacattcttgtattattaattaatctgaAAACGAAAAA

Function

symbol description
smim14 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human SMIM14 (small integral membrane protein 14).

NR:

description
PREDICTED: small integral membrane protein 14

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250482 True 956 TUCP 0.45 5 15666111 15671936
XM_007230224.3 False 919 mRNA 0.47 5 15666166 15671954

Neighbor

gene id symbol gene type direction distance location
ugdh ugdh,LOC107757604 coding downstream 6545 15645138 ~ 15659566 (-)
rpl9 rpl9,LOC107671920,LOC107700291,LOC107709470 coding downstream 29019 15632254 ~ 15637092 (-)
rfc1 rfc1,LOC102787736 coding downstream 36106 15616094 ~ 15630005 (-)
LOC103043828 LOC108437730 coding downstream 105279 15428393 ~ 15560832 (-)
LOC103041363 qdpr,dhpr,qdprb1,LOC108437732,LOC107750446,LOC107702409,LOC107562607 coding downstream 293674 15367109 ~ 15372437 (-)
pds5a pds5a,LOC107757607 coding upstream 12862 15684816 ~ 15707540 (-)
gpr75 gpr75,LOC107602942,LOC107683917,LOC107654975,LOC107553188,LOC107705414,LOC107739897 coding upstream 91232 15763186 ~ 15767780 (-)
dctpp1 dctpp1 coding upstream 423076 16095030 ~ 16096320 (-)
fam160a1 fam160a1 coding upstream 447720 16119674 ~ 16141270 (-)
rps3a rps3a,LOC107695588 coding upstream 508116 16180070 ~ 16184812 (-)
G184854 NA non-coding downstream 397 15665178 ~ 15665714 (-)
G184853 NA non-coding downstream 1226 15660667 ~ 15664885 (-)
G184836 NA non-coding downstream 101228 15564622 ~ 15564883 (-)
LOC111195235 NA non-coding downstream 246904 15412667 ~ 15419207 (-)
G184816 gtf2e2,LOC107671915,LOC107548363 non-coding downstream 279010 15384714 ~ 15387101 (-)
G184863 NA non-coding upstream 49353 15721307 ~ 15722297 (-)
G184865 NA non-coding upstream 54410 15726364 ~ 15726622 (-)
G184868 NA non-coding upstream 60427 15732381 ~ 15732755 (-)
G184869 NA non-coding upstream 60845 15732799 ~ 15733086 (-)
G184870 NA non-coding upstream 72370 15744324 ~ 15744556 (-)
smim18 smim18 other downstream 284903 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 325531 15309509 ~ 15340580 (-)
LOC103032041 NA other downstream 1549655 14063644 ~ 14116456 (-)
trnas-gcu_6 NA other downstream 1574521 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 1576324 14089706 ~ 14089787 (-)
lrat lrat other upstream 1226224 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 1558131 17230085 ~ 17241027 (-)
G185295 NA other upstream 1580313 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 1623547 17295501 ~ 17300782 (-)
nutm1 NA other upstream 1641416 17313370 ~ 17328889 (-)

Expression


Co-expression Network