LOC103032582


Basic Information

Item Value
gene id LOC103032582
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17230085 ~ 17241027 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU251060
cacttacaaaTACCGTAGGAACCACCTAACAACatcatagcaatcacctagcaacaccatagcaactgattagcaataccacagcaaccacttatcaaTACTATTGCAAATGCCTTGAAAATAACTTTAGTTACCACTTAGAAACTGGTTCTATGTGATAACTAAAGTGTTTCAAGGCGGTTGCAGTGGTATTGCTAGGGAGTTGCTGTGGTTTTATctgtttcatttttcttttctttttttgcaggaAGCCTGAAAGGAAAGTCAGGTGGTGCTGTGAAGACTGAGTGGACTCCTGCACagCGCCAGTACTCAACTCCAGGTGACCTAAATCGTGTGAGCATCAGCCTGTCCAACGTTACGGGAGTGCAGATCGGCCACAACAACTACATGAATGTAAATTTACCACGACAGAAACAGCGGCAGAGACACCCGACTGCACCAGCTCAGCTCAACACCTCCAACCCCCACCAGCCTTCCAGACCGAACCCCcaccctaaaccctaaaccaagAACTACCGTTCTCCAGTGTGTTTGACTGGTTCAAACACTCTTTTACTTTCTTAACTCTTTTTCTGTTATAtagaaccatttttaaaaaggtgcattcacataattttatataatttttttattccccAGTTTTGTCCCCTTTCAATGAAATCCTTCCAATTGCAGAAGAAAGCCCAACCTTTTTTATAGCATTGTACAAATGTTATAGTAACATATGAATTTGTGATCAGGTGCATGTAAAAGAACAGGCCCTATACTTTGGGAATTGTTTAAATCTGAGGAAGCTCTGGTACCTCAATAATGGCTATTTCAAAGCCAAATTTAATGTTCTCAGGTATTTTTCAgtctaaaatgtaattttatatctATTTGATTAATCTGTTCAATATTCCGTTTTATAACATAATTGCTATTGGCTATTGTTGGAAAAGTGTACTAATGTTCTGTCTTGTTTGATACTCAGGCTTTGGAATGTATTGTTTTGAGAACTGAAGATTAAGAGTCATTATGAAATTTGGAGGTGCTTTCACTTGTGATTGATTACATATCATGGTACTAATTTTATGGTACTGAAAATCTGCTGTTCTTGTAAATCCTCTATTCCTCTTCTATTAAAAGCT
>XM_022681559.1
AAGActttactgctgctgttttctgtctttctgtcgcCATTTCAGTACATATTACTCATTTTAACCACTTTTACACAGGCTTTCCTTCAGCATGGACGGGATTTAAACTgcccagaaagagagagagagagagaaagagagaagcacTCTCTCTGGGGAGTTAAACTTTTTCCACCCGGACTATGTTTAAGATTCCCCTGAGAAATGGAACTTGCTAGCTGCTCACTACCTGCTGTGATTCACAATGACAGTTTGGACTTCTGGCAGCTGATTGGTTGTGGTGGATTCGGAAAGATCTTCAGAGCAAAGCATCTGAAACTACGATTGGACGTTGCCGTAAAGTTATTACGGTGTGATGACGGCTCCAACTCTACTCTCCTCCGGGAGGCAAACCTGATGCACCATGGTGGGAACCCCTACGTCCTGAGAATTCTGGGTGTGTATGAAGGGCAACCTGAGGGTGAAGAAGCCTCTCAGTTCGGTCTAGTGATGGAGTACATGGAGAGGGGCTCGCTGGTGGACCTCCAGAGGGCTCTAAACGGACCTCCTCCGTGGTCTCTCGCCTTCCGCATCGCCCACCAGATCGCTCTGGGCATGAACTTCCTTCACCAGCTGGATCCACCTCTTCTGCACCTGGACCTGAAGCCCAGCAACGTGCTGCTGGACGACAGCCTCAACGCCAAGCTCACAGATTTTGGCCTGGCCAAAGTGGCCCGAAGCGTTTCCAAAACAGTGAAAGAGGAAGATGGCGAGATGGGCGGGACCACCAGCTACATGCCCCCAGAAGCTTTTCAGTCGGTCTCTTATAAGCCCAGCTTTTCCTCTGATATCTACAGCTATGGTGTTCTGCTGTGGTCAGTCCTCACTGGAAAGGAGCCGTACGACTCTGTACTCTCCAGTTTGGTGAGGTTTCGCATCCCTAAAGGAGACAGGCCTGATCTTAGATCTGTGGACACCAGTAAGGCAGCTGGGCTGAGTGATCTGACCAATCTGATGGAGCGCTGCTGGAACTCTGACCCGAACCGCAGACCTTCATTTAAAGGTGAGGAGCTTctgtataaacatataaactctGTAATCCTTACCCACTTGCTCACTACCTCACAtacctcactctcacacacctgtaATCCTCAACACACCTGCTCACTTACCTCACAtacctcactctcacacacctgtaATCTCACACACCTCCTGAAAGGAAAGTCAGGTGGTGCTGTGAAGACTGAGTGGACTCCTGCACaggacacaggGGGCAGTGCAGTCTCACGACCTAAAGAATCAGAGCCCTTCTTCTACCCAGCTTCTTCAGGAACAAATCACAGGGCAGCTGCCCGAGCTCCTCCCACCAATGACAGGCTTCAGATGACCCAGCGCCAGTACTCAACTCCAGGTGACCTAAATCGTGTGAGCATCAGCCTGTCCAACGTTACGGGAGTGCAGATCGGCCACAACAACTACATGAATGTAAATTTACCACGACAGAAACAGCGGCAGAGACACCCGACTGCACCAGCTCAGCTCAACACCTCCAACCCCCACCAGCCTTCCAGACCGAACCCCcaccctaaaccctaaaccaagAACTACCGTTCTCCAGTGTGTTTGACTGGTTCAAACACTCTTTTACTTTCTTAACTCTTTTTCTGTTATAtagaaccatttttaaaaaggtgcattcacataattttatataatttttttattccccAGTTTTGTCCCCTTTCAATGAAATCCTTCCAATTGCAGAAGAAAGCCCAACCTTTTTTATAGCATTGTACAAATGTTATAGTAACATATGAATTTGTGATCAGGTGCATGTAAAAGAACAGGCCCTATACTTTGGGAATTGTTTAAATCTGAGGAAGCTCTGGTACCTCAATAATGGCTATTTCAAAGCCAAATTTAATGTTCTCAGGTATTTTTCAgtctaaaatgtaattttatatctATTTGATTAATCTGTTCAATATTCCGTTTTATAACATAATTGCTATTGGCTATTGTTGGAAAAGTGTACTAATGTTCTGTCTTGTTTGATACTCAGGCTTTGGAATGTATTGTTTTGAGAACTGAAGATTAAGAGTCATTATGAAATTTGGAGGTGCTTTCACTTGTGATTGATTACATATCATGGTACTAATTTTATGGTACTGAAAATCTGCTGTTCTTGTAAATCCTCTATTCCTCTTCTATTAAAAGCTGCCTTTCAAAGAACCTA

Function

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251060 False 1133 lncRNA 0.38 3 17230102 17232865
XM_022681559.1 True 2224 mRNA 0.46 11 17230085 17241027

Neighbor

gene id symbol gene type direction distance location
sfrp2 sfrp2 coding downstream 105334 17118052 ~ 17124751 (-)
LOC103033731 arfip1,LOC108260818,LOC108434328,LOC107745866 coding downstream 116946 17089154 ~ 17113139 (-)
fhdc1 fhdc1 coding downstream 170423 17042875 ~ 17059662 (-)
npy2r npy2r,LOC107700264 coding downstream 355604 16871017 ~ 16874481 (-)
gucy1a3 gucy1a3,LOC107572203,LOC107695445,LOC107700279,LOC107598251 coding downstream 402731 16804577 ~ 16827354 (-)
LOC103027395 ptprdb,LOC107754148 coding upstream 188935 17429962 ~ 17501430 (-)
rbm47 rbm47,LOC107702361,LOC107754149,LOC107746010,LOC107656158 coding upstream 365078 17606105 ~ 17652838 (-)
lap3 lap3,LOC107754151,LOC107656223,LOC107551587,LOC107702362,LOC107746009,LOC107591534 coding upstream 422324 17663351 ~ 17675440 (-)
LOC103024973 LOC108434356,LOC108260969,LOC107746005 coding upstream 467824 17708851 ~ 17737741 (-)
LOC103045226 NA coding upstream 527353 17768380 ~ 17772217 (-)
G185280 NA non-coding downstream 13976 17204741 ~ 17216109 (-)
G185079 NA non-coding downstream 197693 17032131 ~ 17032392 (-)
G185073 NA non-coding downstream 260321 16966009 ~ 16969764 (-)
G185041 fgg,LOC106602564 non-coding downstream 307591 16921036 ~ 16922494 (-)
G185033 NA non-coding downstream 365879 16857391 ~ 16864206 (-)
G185328 NA non-coding upstream 116401 17357428 ~ 17360299 (-)
LOC111195245 NA non-coding upstream 129725 17370752 ~ 17429772 (-)
G185317 supt16h,LOC106577942 non-coding upstream 150844 17391871 ~ 17393833 (-)
G185318 supt16h non-coding upstream 154226 17395253 ~ 17397947 (-)
G185336 NA non-coding upstream 169183 17410210 ~ 17760211 (-)
lrat lrat other downstream 328401 16898178 ~ 16901684 (-)
smim14 smim14 other downstream 1558131 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 1848877 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 1889505 15309509 ~ 15340580 (-)
trnas-gcu_6 NA other downstream 3138495 14091509 ~ 14091590 (-)
G185295 NA other upstream 11240 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 54474 17295501 ~ 17300782 (-)
nutm1 NA other upstream 72343 17313370 ~ 17328889 (-)
G185321 NA other upstream 88991 17330018 ~ 17331954 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other upstream 777695 18018722 ~ 18050369 (-)

Expression


Co-expression Network