Gene
RNA
| Item | Value |
|---|---|
| gene id | G70808 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 2927665 ~ 2927913 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU80756 | True | 249 | lncRNA | 0.38 | 1 | 2927665 | 2927913 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_02813455_02824934 | GOLGA7BA, GOLGA7B | coding | downstream | 102731 | 2813363 ~ 2824934 (-) |
| CI01000012_02614955_02631276 | SLC25A28 | coding | downstream | 295220 | 2614869 ~ 2632445 (-) |
| CI01000012_02551954_02557017 | GOT1 | coding | downstream | 370648 | 2551954 ~ 2557017 (-) |
| CI01000012_02549682_02550094 | GOT1, GOT1.S | coding | downstream | 377571 | 2549671 ~ 2550094 (-) |
| CI01000012_02413852_02502617 | HPSE2 | coding | downstream | 425048 | 2413852 ~ 2502617 (-) |
| CI01000012_02967143_02967496 | NA | coding | upstream | 37757 | 2965670 ~ 2968315 (-) |
| CI01000012_03172201_03172736 | MARVELD1 | coding | upstream | 243719 | 3171632 ~ 3172736 (-) |
| CI01000012_03280454_03281289 | NA | coding | upstream | 351958 | 3279871 ~ 3281289 (-) |
| CI01000012_03284445_03291645 | NA | coding | upstream | 356432 | 3284345 ~ 3291645 (-) |
| CI01000012_03292460_03316923 | TARBP1 | coding | upstream | 364247 | 3292160 ~ 3316923 (-) |
| G70789 | NA | non-coding | downstream | 19702 | 2907736 ~ 2907963 (-) |
| G70780 | NA | non-coding | downstream | 48553 | 2878899 ~ 2879112 (-) |
| G70778 | NA | non-coding | downstream | 53653 | 2873809 ~ 2874012 (-) |
| G70776 | NA | non-coding | downstream | 56159 | 2871176 ~ 2871506 (-) |
| G70772 | NA | non-coding | downstream | 62725 | 2864733 ~ 2864940 (-) |
| G70818 | NA | non-coding | upstream | 587 | 2928500 ~ 2929086 (-) |
| G70833 | NA | non-coding | upstream | 16098 | 2944011 ~ 3115095 (-) |
| G70868 | NA | non-coding | upstream | 93424 | 3021337 ~ 3021872 (-) |
| G70916 | NA | non-coding | upstream | 303786 | 3231699 ~ 3236640 (-) |
| G70956 | NA | non-coding | upstream | 457393 | 3385306 ~ 3385513 (-) |
| G70774 | NA | other | downstream | 60773 | 2866508 ~ 2866892 (-) |
| G69562 | NA | other | downstream | 1551367 | 1332075 ~ 1376298 (-) |
| CI01000012_01139864_01192154 | TTC7A | other | downstream | 1776467 | 1135676 ~ 1192154 (-) |
| G69332 | NA | other | downstream | 2151786 | 775364 ~ 775879 (-) |
| G69277 | NA | other | downstream | 2197200 | 729920 ~ 730465 (-) |
| G71898 | NA | other | upstream | 1605617 | 4533530 ~ 4534672 (-) |
| G72068 | NA | other | upstream | 1848307 | 4776220 ~ 4780132 (-) |
| G72204 | NA | other | upstream | 2365860 | 5293773 ~ 5302206 (-) |
| CI01000012_05414096_05416676 | TTC9 | other | upstream | 2435729 | 5413369 ~ 5416780 (-) |
| G72294 | NA | other | upstream | 2534927 | 5462840 ~ 5465857 (-) |
