LOC103027206


Basic Information

Item Value
gene id LOC103027206
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 202308 ~ 207014 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229284.2
CTATCTGGCAGTGTTGCGTAGTCTTACCTCTTCTCATAACTGCTCCCACCTTAGATGCACGTGCTATAGCCCGCTCATTATCTTGTCTTGATCTGGattcaatttttcatttttttttttgttccacgTGGATCACTTAAACGCACGCATTATGAGACCTCTGCTGCCCCTGTTTGTGAGCACCATAGGCTTGATCCTTTCCATTGCTGCTGTTCCTGGGACTTgccaaaacacaacaaatgCAACTAGAAGTACACCCTTTATGATGTCCACCATTCCTGCTCGAATCAGCCAAAACACAAGTGAAGAGGCACCTAAAACCACCTTCTCTGAAACTGTACACATAGCGACGAAAGACACAAAAACGTCAGCGAGTGCTCAAACTCAAGCTACCAAGACAACTAAAACCTTCACGACCACAAACCGGCGTCAGACCAAATCACAAAACTTAAAACCGTCAGGCTCCTCAGGCTCAGTGGTGGCAGTATTGTTCTTCATCCTGCTGCTCCTCATCCTCTTGGTCATCTTGTACAGATGGTACAAGAATAATCCCGAGCGTCGCTCCTGCCGTGGGCTGCGGGACAGCGTAGTGGAGACGGCGCAGTGCGCTTGGGCCGCAGCGATGGCATGTCTTCAGCATCCTCAGAAACAACCTGGGCAAGCAGAGGACGAAGACGAAGAGGAAGACGAAGAGGACAACGAGGAGGCGGTGGTGGTGGAGATGGAGATACAGGAGAGTGATGGAGGGCAGAAGACGGAAAGAAAtggcaaagaagaagaagacgggGCGAGAAAAAACGAGGACGACGCAAGTTCTGATTCGGAAACCTCCTCCGAAGACTACTCGTTCGTAGAGGGTGGCAACGTGGCAGATGACGAGAATCAAAATGATGGAGATGAGGGGTCCGGGAGGAGCAACAAGGAGGAGACAGAGGAAATGACGTCGGTCAAGTTAGACGACGAGGAGGAAGCGGAGAAAGCAGAGCCGGAGGAATCGGATGATCTTACGCCACTGTGAAATGTGCTGAAGATAGGTGATGGAAGTGGATGAATATAAGGGAtgctatccaatgaaaaacatgtatatttatttgatttttttgtccGTTATTTGGGTTTACCATCGTTTTAACATCGTAGCTGCTCTGTTTACTGTGCAAAGAATTGTGgatgaatacaataaaagaccaaaaaaatactCTTTGGGGGTTTTCACCAATAGTTCACTTCTATAATCCTAATTAGTCAACAGGTTTGTTACCTTGAATTGTTTCTTAGGTTAAACTACACCTGTATAGTCTTTTGGCTCAAACATGAGGAGTATATATATGATCGTTGGTGTGGTTGGATGGTGACTAAAACAAggcacataaaaataaaaatacaaacaaaccaaagtcaagttttaaccggaccaaatagtgcttttttttggagatacatgtttttcattggacagcaacaatataaatGGGTTGGAtgacaaattaaatattttaggattTAGGATTTTAGTTTTTGTATGATAGACCAACATGCACTCTAATGTCTAATGtgctagcaaaaaaaaaaactgttttaaaaaacgtgtttacataaaaaagaaaacatgtaaaaaaaa

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0002521 leukocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0001775 cell activation biological_process
GO:0030217 T cell differentiation biological_process
GO:0002376 immune system process biological_process
GO:0046649 lymphocyte activation biological_process
GO:0048884 neuromast development biological_process
GO:0045321 leukocyte activation biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229284.2 True 1621 mRNA 0.43 2 202308 207014

Neighbor

gene id symbol gene type direction distance location
LOC103030568 camk2d2,LOC107714220,LOC107742503,LOC107563926 coding upstream 94418 65881 ~ 107890 (+)
LOC111195165 NA coding upstream 156655 40066 ~ 45653 (+)
LOC103026105 LOC103353182,LOC103469355,LOC103137796,LOC106954674,LOC102796940,LOC102236590 coding upstream 178342 12979 ~ 23966 (+)
LOC111195167 NA coding downstream 38452 245466 ~ 247320 (+)
LOC103031511 NA coding downstream 43462 250476 ~ 256183 (+)
LOC111195169 NA coding downstream 51877 258891 ~ 264780 (+)
LOC103032143 NA coding downstream 100663 307677 ~ 315123 (+)
LOC103032759 NA coding downstream 118622 325636 ~ 329837 (+)
G181777 NA non-coding upstream 36264 163629 ~ 166044 (+)
LOC111195166 NA non-coding upstream 108539 93165 ~ 93769 (+)
G181750 NA non-coding upstream 173319 27415 ~ 28989 (+)
G181775 NA non-coding downstream 732 207746 ~ 208523 (+)
G181782 rps6kb2,LOC108413157,LOC108260512,LOC103368287,LOC104930044,LOC101478146,LOC102204811 non-coding downstream 4821 211835 ~ 231061 (+)
G181797 NA non-coding downstream 61688 268702 ~ 269257 (+)
G181798 NA non-coding downstream 64540 271554 ~ 273833 (+)
G181800 NA non-coding downstream 72551 279565 ~ 279790 (+)
G181779 cd027,LOC108413410 other upstream 2312 191957 ~ 199996 (+)
G181799 NA other downstream 69657 276671 ~ 278173 (+)
G181801 NA other downstream 75062 282076 ~ 286281 (+)
LOC111195149 NA other downstream 81996 289010 ~ 390166 (+)
LOC111195150 NA other downstream 93081 300095 ~ 306312 (+)
G181818 NA other downstream 184600 391614 ~ 392130 (+)

Expression


Co-expression Network