LOC103027497 (LOC108413410)


Basic Information

Item Value
gene id LOC103027497
gene name LOC108413410
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 191958 ~ 199979 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229285.3
ATGACGTAAAGGTTACGCGCGGTTACGTAGTGACGTGCTGCGTGTGCTGAAGAAGGAGAAAATGGCGGGACGCGGGAAAAGGAAAGCCAAAACTACCCCACAGGTGGGGCAGGTGAATGGGCAGGTGAAGCGAAAGCGAGGTGAGGAGGTGGAGTCGGGGGCGGAGACAGGGTCGGGTGTTCCGCTGCAGGTGAGGGAGGAGGTGGAGAGGCTGTATAAACTCCGTATGCCAGAGGATTTCTACCAGTTCTGGAATTTCTGCAAACAGATCAGCCCTGACGATCCAGCAGATGCTCTGCAGGAAGCTCTAGGTCTGCGATTGGTGGGTCCGTTTGATATCCTGGCTGAGAAGCACCGGCACTGTGGCTCGGCCCAGCCCAACTTCCACCTGCACTGGCGATTCTTCTACGACCCCCCGGAGCTTCAGACAGTCCTGCGGGGAGATGCTGAAACTCAGCACCACATGGGCTACTACAGagactGCCCTGATGCTGTGCCAGTGTTTGTCGGAGAGAATGAAGGGAAGAAGGGCTGCAAAATCACCCAGCTGGGGGACAATCTCTTCTCCGCTGTGCTTTTGTTTCTGGCCCGTAAGAAGCGAGAGCGTGGAGTGCGGAAGGACGAAGCAGCTCTGGAGCAATTGGAGGTGAAACTCAAGAAGGAAGCGGAGCGTCTGGGGCTGCCGCTGGAGCAAAAAACCAAAGCCATGAAAGCAAGAGACAGGAAGGTCGTCACTAAAACCTTCCACGGAGCGGGGATCGTGGTACCGGTAGACAAAAATGACGTGGGATACCGAGAACTGCCCCATAGTGATGcTGATCTGAAGAAGATCTGCAGGGATATCGCAGAAGCTGTGGATGATAAAGCCAGGATGACGGCCTTTGCTCCTATTCAGGAGATGATGACGTTTGTGCAGTTCGCTAACGATGAGTGCGATTACGGAATGGGCTACGAAGCCGGCATCGACCTCTTCTGCTTCGGATCACATtACTTCCATAAGATCATTGGTCAGTTGCTGCCGATGGCCTACGACCTGCTAAAGCGGAGTGTGTTCGGAGAAATAATTAAAGCTCACCTCGCCAACCGTTCCCATGGCAACCTGGATCAGCTGACCGGCTCCTAAGAGGCTGTGCCTCACGGCGACTTCCTGGTCGTGGGCGGAGCTTCATGTGATGGACGTTGCCGGGGGAAGTGTGTGCTGAGCTCAGATTACAGTCGAAGAAGCTAATGCAGATCAGAGGGGCTTTAATGGACATTACTGTGGATACCGACAAACACTCACGCGCATGcagagtatacacacacacacacacacacacacacacacacaccaaagcaGCCAAAGAACCTCCTCGTGCTGACTCAGCAGAGTCTAGAACCATAATGGTCTTTAGAGTTCCGCAGAGCTCACAGCAGACTGGACGTGTTGGCTTCTTAACGTGATCCAGatcagaaaaagagagtgatatTTGGACATAATCCAAGTAAATAATTGGACATATTAATCCTGATTTGTCACTTCAAATATTAATCCAGAttttgtctctgtgtttatttatttatttagttctgGTATATGGTATGAATCCAAATCCAGACTGTTTTTCTCAAACCTGTTTAACTAGATCAGAATAGTAATTCCAGTCCACACTCCATCCAGGTACTCTTCTAGATTTGATGCCTGCTCATCTAATTCTATTCTAATCCTGATTTATACTATGGTGCAAAGCTGCGGTTATCTGGACCCGTATTCATCAGCTTGATCTAGAACCTCATTTGGGTCTGTCTCCTTCCGTCTGAAGCTCTGTGTGCTGCTGTAGATCGGTTCTAAACTCTGGACCAGTTCAGTCCTCCTCCACCAAGGATGTTTTTGTTCATGGAGAACTGGACTTAATGGTTTAAGGTGGTTCTGTTATGTTATCGACTCTGTGGTACGTGTTCATAAGGTTGTTCAGAAGTAGAGAAttaataaagtgtatatttttatttga
>XM_022681616.1
ACGTGCTGCGTGTGCTGAAGAAGGAGAAAATGGCGGGACGCGGGAAAAGGAAAGCCAAAACTACCCCACAGGTGAATGGGCAGGTGAAGCGAAAGCGAGGTGAGGAGGTGGAGTCGGGGGCGGAGACAGGGTCGGGTGTTCCGCTGCAGGTGAGGGAGGAGGTGGAGAGGCTGTATAAACTCCGTATGCCAGAGGATTTCTACCAGTTCTGGAATTTCTGCAAACAGATCAGCCCTGACGATCCAGCAGATGCTCTGCAGGAAGCTCTAGGTCTGCGATTGGTGGGTCCGTTTGATATCCTGGCTGAGAAGCACCGGCACTGTGGCTCGGCCCAGCCCAACTTCCACCTGCACTGGCGATTCTTCTACGACCCCCCGGAGCTTCAGACAGTCCTGCGGGGAGATGCTGAAACTCAGCACCACATGGGCTACTACAGagactGCCCTGATGCTGTGCCAGTGTTTGTCGGAGAGAATGAAGGGAAGAAGGGCTGCAAAATCACCCAGCTGGGGGACAATCTCTTCTCCGCTGTGCTTTTGTTTCTGGCCCGTAAGAAGCGAGAGCGTGGAGTGCGGAAGGACGAAGCAGCTCTGGAGCAATTGGAGGTGAAACTCAAGAAGGAAGCGGAGCGTCTGGGGCTGCCGCTGGAGCAAAAAACCAAAGCCATGAAAGCAAGAGACAGGAAGGTCGTCACTAAAACCTTCCACGGAGCGGGGATCGTGGTACCGGTAGACAAAAATGACGTGGGATACCGAGAACTGCCCCATAGTGATGcTGATCTGAAGAAGATCTGCAGGGATATCGCAGAAGCTGTGGATGATAAAGCCAGGATGACGGCCTTTGCTCCTATTCAGGAGATGATGACGTTTGTGCAGTTCGCTAACGATGAGTGCGATTACGGAATGGGCTACGAAGCCGGCATCGACCTCTTCTGCTTCGGATCACATtACTTCCATAAGATCATTGGTCAGTTGCTGCCGATGGCCTACGACCTGCTAAAGCGGAGTGTGTTCGGAGAAATAATTAAAGCTCACCTCGCCAACCGTTCCCATGGCAACCTGGATCAGCTGACCGGCTCCTAAGAGGCTGTGCCTCACGGCGACTTCCTGGTCGTGGGCGGAGCTTCATGTGATGGACGTTGCCGGGGGAAGTGTGTGCTGAGCTCAGATTACAGTCGAAGAAGCTAATGCAGATCAGAGGGGCTTTAATGGACATTACTGTGGATACCGACAAACACTCACGCGCATGcagagtatacacacacacacacacacacacacacacacacaccaaagcaGCCAAAGAACCTCCTCGTGCTGACTCAGCAGAGTCTAGAACCATAATGGTCTTTAGAGTTCCGCAGAGCTCACAGCAGACTGGACGTGTTGGCTTCTTAACGTGATCCAGatcagaaaaagagagtgatatTTGGACATAATCCAAGTAAATAATTGGACATATTAATCCTGATTTGTCACTTCAAATATTAATCCAGAttttgtctctgtgtttatttatttatttagttctgGTATATGGTATGAATCCAAATCCAGACTGTTTTTCTCAAACCTGTTTAACTAGATCAGAATAGTAATTCCAGTCCACACTCCATCCAGGTACTCTTCTAGATTTGATGCCTGCTCATCTAATTCTATTCTAATCCTGATTTATACTATGGTGCAAAGCTGCGGTTATCTGGACCCGTATTCATCAGCTTGATCTAGAACCTCATTTGGGTCTGTCTCCTTCCGTCTGAAGCTCTGTGTGCTGCTGTAGATCGGTTCTAAACTCTGGACCAGTTCAGTCCTCCTCCACCAAGGATGTTTTTGTTCATGGAGAACTGGACTTAATGGTTTAAGGTGGTTCTGTTATGTTATCGACTCTGTGGTACGTGTTCATAAGGTTGTTCAGAAGTAGAGAAttaataaagtgtatatttttatttga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229285.3 True 1991 mRNA 0.49 8 191958 199979
XM_022681616.1 False 1950 mRNA 0.49 8 191958 199947

Neighbor

gene id symbol gene type direction distance location
LOC103030885 LOC107692594,LOC107702307 coding downstream 1217 109764 ~ 190741 (-)
LOC111195164 NA coding downstream 156445 28644 ~ 35513 (-)
LOC103030254 LOC108413195 coding downstream 180757 8 ~ 11201 (-)
rps6kb2 rps6kb2,LOC108413157,LOC108260512,LOC103368287 coding upstream 7672 207651 ~ 231129 (-)
LOC111195168 NA coding upstream 64981 264960 ~ 270360 (-)
ctnna2 ctnna2 coding upstream 753020 952999 ~ 1099800 (-)
LOC103026423 ppp2r2ca,LOC103026423,LOC107692591,LOC107563918,LOC107742501,LOC108413194,LOC107562984 coding upstream 1179514 1379493 ~ 1390551 (-)
LOC103024763 LOC108434311,LOC108434344 coding upstream 1214090 1414069 ~ 1421243 (-)
G181846 NA non-coding downstream 97369 92965 ~ 94589 (-)
G181853 NA non-coding upstream 20763 220742 ~ 262756 (-)
G181858 NA non-coding upstream 41707 241686 ~ 242173 (-)
LOC111195159 NA non-coding upstream 122652 322631 ~ 323782 (-)
G181888 NA non-coding upstream 194997 394976 ~ 395203 (-)
G181890 NA non-coding upstream 210247 410226 ~ 410543 (-)
LOC103026712 NA other downstream 143664 45736 ~ 48294 (-)
cisd2 cisd2 other upstream 294211 494190 ~ 508064 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other upstream 1385516 1585495 ~ 1712137 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other upstream 3195140 3395119 ~ 3454586 (-)
G182501 NA other upstream 3347654 3547633 ~ 3550413 (-)
LOC103027068 NA other upstream 4907057 5107036 ~ 5109098 (-)

Expression


Co-expression Network