LOC103027614 (LOC103027614)


Basic Information

Item Value
gene id LOC103027614
gene name LOC103027614
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13799521 ~ 13807329 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230155.3
ACTTAATGTTCCCCGGCCACCTtaacagaggaagagagggcAGGCTTCGAAAAAGTGAAACGCCAGAAAGACACACCCACACAGCTGTTGAACATCCAGAACAAGTCCAGCTTCGTTCCACAAGGCAACCTTCATCTGGACAGaaATAACAGATCAGACCCTCCCTGAGAAGCAATCCAAATGGCCTCCCAAGTCATGGGCACAAACATCACAAACCCCGACCCATGTCATTTGGTCTTGGCACATAAGAGTTCCCGTTACATCGGGATAGTCATACTAGTGCTAGCCTTTGTGCTGGGTTTTCCAGGCAACCTCTTCGTGGCGTGGTCAGTGCTCTGCCGGGTCAAGCAGCGCTCCGTCACTTGCCTCCTGGTGCTGAACTTGGCGGTGGCCGATGCGTTTGTGCTCCTCAGTGCCCCCTTGTTTCTGCGCCTGCTGGCCGTGTTGAATTGGGAGTTCGGAGATGTCATGTGCAAGACAGTGCACTACCTGTGCTGCGTCAACATGTATGTGTCCATCTACCTCATCTGCCTGATGAGCCTGGACCGCTGGCTGGCTGTAAGCAGGCCGTTtctgtctcagaaaatgagGAACAAAAGGACCATCTACATGGCCATGCTGGGCATCTGGATCATGGCCTTTTTATTGGCTTTGCCTATGCTGTTCTACCGCAGTAACAGAAAACTGAAGAATACAAACGTGACTCTTTGTATGCCGCTCCATTCCCACTATGTACATACAGTCTTCCAATACCTGTTTGAAACGCTCATGGGCTTTGTGGTGCCATTCACCTTCATCGTGTCTTGCTACTCCTCGGTAATCTGCCGACTACGCAGCGCCATGTTTCGCGGCCGTGTGAAGGGCAGCCTTctcatcctcctcatcatcaGCGCCTTCTCCATCTTCTGGATACCCTACCATCTGATCAACATACTCGAGGTCATCGGGGCTTGGATGGATGTTTGCTCTCTTAAACAAGCGGCGTTGTCCGCTCGCCCCAACGTAACTGCGTTTGCCTTCCTGAGCAGCAGCGTGAACCCAGTCCTCTACGTGTTTGCTGGCAGCTCCTACATCCGCGACGCCGGCTTCAGCTTCATGGCCAGGCTTCTTGAAGGCACCCACTCAGACCAGGCCTCTGTCAGAAGCAGGCGTTTAACTTCCACAGACAACTCCATCTTCACAAAGCTGACGATTAAAGCCGTCCAGAATGGAGAGCGGGCCAGGAACAAGAGCTCTGGAGACGAGGAGAAGACAAAGATGGAGAAGAGCTGTGTGGAGGAGGTCAATACCTTAACCACAATGCATATCACAGATTGACAATGCCCAAGATTACCATTGTACCACAGCACAGGGCAGGCTGCATCCTGTGCAATCCAAGCTATTATCTATTCGCCAAAAAAAAGGGGGCTCCTTTTGTGTTCTTGGTGCAGCTTGAAAATCAAACAGAAGAATCTGTGGAGAGACAAGTGGGACATCTTGAAGGAAAGGGCTTCTACCTGGAGCTTGCGATGTATTTTCATTCTCAATTTTCTGAGCTTTGTGACTTTTTAATTGCACTGTAGATTTGTTTTCTATGCGCTGTGTTATGTTTAGCatttaaaatagcatttaaacTCATTGCCAGAAAACCTCAGAAGGAATCAACGGACAGGAATGAGCAAGATTGATTCAGAATGACAGTATGTCGTGAATCTGTGTAGGCACTGTGGTCATTGCCAAGATCAATtgtttcagcaggacaatgctcatccacatacagCTGCCACCTCAACATCTCAAAATGCTATGGCCAATCACATTGCCAGACCTTGTGTGGGATATCATTGGACATTCCAGTTAGTTTTCAAAGATTACAATCTATAAGACTCTGCTGTTATCCAGTAGAGATCTAGAAGAGAGATAGTCAGAAAAGCCTTTGTATGTAAGATTGATTGTACATCACTTCACTATTCCAACGCATGTTAAGACAGATATAACTGTgtctacagtaaaaaaaacaaaaacaagtgtaGCACTTTATCTGGATGGTCAATTACGGATCatagatgcctcatagatgctcaccAAACATTCAACCAACATTCAATTAAATTTCTTTTAACtgtaacatatacagtatatactatatactgaatTTAAATTATTCTCTACGGAATCTAACCCTTTCTGTGACGTGCCGGTTGTTCAGTAAAGTAGTGATTCATTATATTCATAGGCGAagtaaaatgtttaatcattATATTGATTTAAGGCCATATCGCTCAGCACTCCCTTGAATCAAGACAGCCATATTTCCCATACTTGTGGAAAGATGGAATGCAGTCTCCTTATTTAACCCatctttacacaaacacacacatagattCCCAGAGTCTTGGGCAGCCAACCtttatatttagattaaattTAGTATTGATAAATCtaagtatcacaatattatgtTTTGTAATACTGTATTGATAGTTAAAAGCACGGtacactttaatttaattaataccaATGCAaatattggtgtcagacagtggttcattttgtgatGTGTGTTTGAACCACAATCATTTTGTTTACTATCCCATTGTTCTGCCTgcataaaaaaagcaaacttttatttttagtcagattttataaataaactcctggtcaaaagtttaagaACTCCCCCATTTTTTGTCATTCATGTTTGTCATTTATATTCTTCAGCTTCAGTGAATATCCTGAAAAAAAGTCAACTTATAATGTCTTTGTCTCTAGTAAAGCTATGTTGGACAGAT
>XM_007230156.3
TACACTTAATGTTCCCCGGCCACCTtaacagaggaagagagggcAGGCTTCGAAAAAGTGAAACGCCAGAAAGACACACCCACACAGCTGTTGAACATCCAGAACAAGTCCAGCTTCGTTCCACAAGGCAACCTTCATCTGGACAGaaATAACAGATCAGACCCTCCCTGAGAAGCAATCCAAATGGCCTCCCAAGTCATGGGCACAAACATCACAAACCCCGACCCATGTCATTTGGTCTTGGCACATAAGAGTTCCCGTTACATCGGGATAGTCATACTAGTGCTAGCCTTTGTGCTGGGTTTTCCAGGCAACCTCTTCGTGGCGTGGTCAGTGCTCTGCCGGGTCAAGCAGCGCTCCGTCACTTGCCTCCTGGTGCTGAACTTGGCGGTGGCCGATGCGTTTGTGCTCCTCAGTGCCCCCTTGTTTCTGCGCCTGCTGGCCGTGTTGAATTGGGAGTTCGGAGATGTCATGTGCAAGACAGTGCACTACCTGTGCTGCGTCAACATGTATGTGTCCATCTACCTCATCTGCCTGATGAGCCTGGACCGCTGGCTGGCTGTAAGCAGGCCGTTtctgtctcagaaaatgagGAACAAAAGGACCATCTACATGGCCATGCTGGGCATCTGGATCATGGCCTTTTTATTGGCTTTGCCTATGCTGTTCTACCGCAGAAAACTGAAGAATACAAACGTGACTCTTTGTATGCCGCTCCATTCCCACTATGTACATACAGTCTTCCAATACCTGTTTGAAACGCTCATGGGCTTTGTGGTGCCATTCACCTTCATCGTGTCTTGCTACTCCTCGGTAATCTGCCGACTACGCAGCGCCATGTTTCGCGGCCGTGTGAAGGGCAGCCTTctcatcctcctcatcatcaGCGCCTTCTCCATCTTCTGGATACCCTACCATCTGATCAACATACTCGAGGTCATCGGGGCTTGGATGGATGTTTGCTCTCTTAAACAAGCGGCGTTGTCCGCTCGCCCCAACGTAACTGCGTTTGCCTTCCTGAGCAGCAGCGTGAACCCAGTCCTCTACGTGTTTGCTGGCAGCTCCTACATCCGCGACGCCGGCTTCAGCTTCATGGCCAGGCTTCTTGAAGGCACCCACTCAGACCAGGCCTCTGTCAGAAGCAGGCGTTTAACTTCCACAGACAACTCCATCTTCACAAAGCTGACGATTAAAGCCGTCCAGAATGGAGAGCGGGCCAGGAACAAGAGCTCTGGAGACGAGGAGAAGACAAAGATGGAGAAGAGCTGTGTGGAGGAGGTCAATACCTTAACCACAATGCATATCACAGATTGACAATGCCCAAGATTACCATTGTACCACAGCACAGGGCAGGCTGCATCCTGTGCAATCCAAGCTATTATCTATTCGCCAAAAAAAAGGGGGCTCCTTTTGTGTTCTTGGTGCAGCTTGAAAATCAAACAGAAGAATCTGTGGAGAGACAAGTGGGACATCTTGAAGGAAAGGGCTTCTACCTGGAGCTTGCGATGTATTTTCATTCTCAATTTTCTGAGCTTTGTGACTTTTTAATTGCACTGTAGATTTGTTTTCTATGCGCTGTGTTATGTTTAGCatttaaaatagcatttaaacTCATTGCCAGAAAACCTCAGAAGGAATCAACGGACAGGAATGAGCAAGATTGATTCAGAATGACAGTATGTCGTGAATCTGTGTAGGCACTGTGGTCATTGCCAAGATCAATtgtttcagcaggacaatgctcatccacatacagCTGCCACCTCAACATCTCAAAATGCTATGGCCAATCACATTGCCAGACCTTGTGTGGGATATCATTGGACATTCCAGTTAGTTTTCAAAGATTACAATCTATAAGACTCTGCTGTTATCCAGTAGAGATCTAGAAGAGAGATAGTCAGAAAAGCCTTTGTATGTAAGATTGATTGTACATCACTTCACTATTCCAACGCATGTTAAGACAGATATAACTGTgtctacagtaaaaaaaacaaaaacaagtgtaGCACTTTATCTGGATGGTCAATTACGGATCatagatgcctcatagatgctcaccAAACATTCAACCAACATTCAATTAAATTTCTTTTAACtgtaacatatacagtatatactatatactgaatTTAAATTATTCTCTACGGAATCTAACCCTTTCTGTGACGTGCCGGTTGTTCAGTAAAGTAGTGATTCATTATATTCATAGGCGAagtaaaatgtttaatcattATATTGATTTAAGGCCATATCGCTCAGCACTCCCTTGAATCAAGACAGCCATATTTCCCATACTTGTGGAAAGATGGAATGCAGTCTCCTTATTTAACCCatctttacacaaacacacacatagattCCCAGAGTCTTGGGCAGCCAACCtttatatttagattaaattTAGTATTGATAAATCtaagtatcacaatattatgtTTTGTAATACTGTATTGATAGTTAAAAGCACGGtacactttaatttaattaataccaATGCAaatattggtgtcagacagtggttcattttgtgatGTGTGTTTGAACCACAATCATTTTGTTTACTATCCCATTGTTCTGCCTgcataaaaaaagcaaacttttatttttagtcagattttataaataaactcctggtcaaaagtttaagaACTCCCCCATTTTTTGTCATTCATGTTTGTCATTTATATTCTTCAGCTTCAGTGAATATCCTGAAAAAAAGTCAACTTATAATGTCTTTGTCTCTAGTAAAGCTATGTTGGACAGAT

Function

NR:

description
leukotriene B4 receptor 1-like isoform X1

GO: NA

KEGG:

id description
K04296 LTB4R1; leukotriene B4 receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230155.3 True 2771 mRNA 0.44 4 13799521 13807326
XM_007230156.3 False 2768 mRNA 0.44 4 13799521 13807329

Neighbor

gene id symbol gene type direction distance location
mpdz mpdz coding downstream 920501 12816580 ~ 12879020 (-)
LOC103046990 rasgrp2,LOC108427446,LOC108261011,LOC106608563 coding downstream 1038590 12707652 ~ 12760931 (-)
LOC103040758 LOC108427447 coding downstream 1274201 11673093 ~ 12525320 (-)
cfap36 cfap36 coding downstream 2172047 11613656 ~ 11627474 (-)
pnpt1 pnpt1,LOC106607983 coding downstream 2187670 11597278 ~ 11611851 (-)
LOC103028152 NA coding upstream 6069 13813398 ~ 13827899 (-)
drap1 drap1,LOC106608686 coding upstream 243401 14050730 ~ 14058635 (-)
lurap1l lurap1l coding upstream 380347 14187676 ~ 14198597 (-)
LOC103033946 tyrp1,tyrp-1,LOC108260967,LOC105903131 coding upstream 392894 14200223 ~ 14207686 (-)
LOC103042598 crgm2,LOC103042598,LOC108427435,LOC108427436,LOC108260664,LOC108260584,LOC108260580,LOC108441183,LOC108260581 coding upstream 531385 14338714 ~ 14340598 (-)
G184338 NA non-coding downstream 69578 13724758 ~ 13729943 (-)
G184330 NA non-coding downstream 121743 13676337 ~ 13677778 (-)
G184256 NA non-coding downstream 179685 13619632 ~ 13619836 (-)
LOC111195153 NA non-coding downstream 180896 13615683 ~ 13618625 (-)
LOC111195158 NA non-coding downstream 193938 13603276 ~ 13605583 (-)
G184354 heatr5b non-coding upstream 27452 13834781 ~ 13836418 (-)
G184396 NA non-coding upstream 120777 13928106 ~ 13928313 (-)
G184422 LOC104965148,LOC104966956,LOC103385808 non-coding upstream 321199 14128528 ~ 14131095 (-)
LOC111195216 NA non-coding upstream 372776 14180105 ~ 14185344 (-)
G184447 NA non-coding upstream 528617 14335946 ~ 14336641 (-)
LOC111195226 NA other downstream 204768 13551132 ~ 13594753 (-)
LOC111195225 NA other downstream 495841 13226333 ~ 13303680 (-)
G184051 NA other downstream 1602863 12195212 ~ 12196658 (-)
gtf2a1l NA other downstream 2387877 11402707 ~ 11411644 (-)
G183880 NA other downstream 2492700 11306289 ~ 11306821 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other upstream 181480 13988809 ~ 14040245 (-)
LOC103032041 NA other upstream 256315 14063644 ~ 14116456 (-)
trnas-gcu_5 NA other upstream 282377 14089706 ~ 14089787 (-)
trnas-gcu_6 NA other upstream 284180 14091509 ~ 14091590 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other upstream 1502180 15309509 ~ 15340580 (-)

Expression


Co-expression Network