LOC103028152


Basic Information

Item Value
gene id LOC103028152
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13813398 ~ 13827899 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230158.2
gagagagaggagagagagagagaggaggaaagtGAAGAAGGGAAGAGGACCAGATATGAAGGAGTATAAAAGATAAAGGGCCAAAAATGAGAGGAGCCTAAAGAATATTCCAGTTTAAAAGAAACTACAGGAGAAACAGGAAACCACTTTAACCAAGCAGAAGAACAGAAATAGAACAAacagaaacaagaaaaagaagtTTTAGACACCTAACCTGACCATCACTTCCATGTGAAGATCCTTGGGCTTGTCCTTCTGCTTTCCAGCTCCTCTCTTTCCTGATCAGGTCATCATCATGGCATTAAACAACACAGCCATCACACAGTCCTCTATCACGCTCTCCATCTCTCCAGCATCACCCAACAACCTCACATCCTCCTTCCCCAACTATACCATCTTCACCACATCTCCAGCCACTCCCTCTGAGACCATTATGAGCAACAACAGTGGAGCTCTAGGAGGGGCCCTGATCCTGACCCTCGTCTTCCTTATAGGCGTTCCCGGCAACCTCTTTGTCATCTGGAGCATCATGGCCCGAACGCGGCGCCGCTCCATCACCACCACGCTCATCCTCAACCTGGCCTGTGCTGACGGCTCTCTGATGGCCCTGACTCCATTCTTCATCATCTACCTGGTCAGGCAGGGCTGGGTCTTTGGACTTGCTATGTGCAAGGTGCTGTTCTACCTCTGCTGTGCCAACATGTACGCCTCCATATTCCTCATCACACTAATGAGCCTGCACAGGCTTGTGGCGGTGGTGTGGCCTCGGCACCTGAGAGGACTGACCTCTCAGAGGACAGTGgtgcgggtgctgctggtgctttgGTTTCTGGCCTTAGCCCTGGCTGTTCCCGTTTTGGTTTTCAGAGAACTGACTCAGAGGAAGACTAAGGAGACAAATGTGACTGGTATAAAAAGTCTGGTGTGCAGCTGTGAGCACCCCCAGCCACAATATgCTGTAATGCAGTACGGTATGGAGACGTTTCTAGGGTTTCTGCTGCCGTACGGACTGATTTTGGGCAGCTACATGTGCATCCTTCGCAAAATCCGCAGGACAAAGTTCAGAAGGCGGATCCGCAGCGAGAAGCTAATACTGACCATCGTCATTACCTTCTGCCTCTTCTGGCTTCCCTACCATGTCATCAACAtggtgcagGTGGTGGAGGCATTGTCTCCTAAAGGTTCTcctttaaaagaaaaACTTGGTCATATCTGGAAGTCTCTAAGGGCTCTCACATCCACGGTGGCCTTCGTCAGCAGCTGCATCAACCCCGTCCTCTACACCCTGGTGGGGAAGTCGTATATCCGGGCTGCGGGCGTGGCCTTCATGGCGCGTCTCTTCGAGGCTGCAGGCCTCGACTCCACATCGCGCAAAGTCCGCCAGAGCAGCCAGAACAGCCGGGACCGGGACAGAGAAAGGGCGGAGAGCGAGGAGCTCCGCAACAAAGAGAGCGACTCCACCACCAGCGGAAACACCAGCTCCAACATCAAAGTCGTTCCCATCACAAATGGAAAGTAGTTGAATGTGAAAAGCTAGTTACACACTTTCTTCAAAAAACAACAGGTTGTGAGATTCGCTTCTGCTGTCTATAACTGCGTTCTGTTACAGCAGCTACCTGTATAATTCTAATTAATTATGGGGATAGAAAAGCTTTACAGAACACTGGCAAAGTGGCGGAGGAAAGTGCCGGATCCCCAGctcagatacatcagctaacagatgtctgcgctgaccaacatcaccttggatgggagtgatgtgggggcAAAGAGCAAGacaaagcaaggccaattgagCCCGCTCGGACTCTGTCTGATGATGGAGAAGCAGAATGATGTGCGATTCAAACCAGCGACCCTTGGATCATCAGAATATACAATTTAACAAGAAAGGTCCTCCTAAATTAAGTATTTCTCAAGTTTAGATCATTGTAGTAATATTACAAGTGGTTAAGTAATgccttaactaattattaattgacacttgTTAAGATGCTATTGAACATTACTAAATTTTAAGGCTTAAGAATGatgtaaataataatcaatCGAGACTCTAGATTAAAATGTGTAATGATGAATTATGTCTTATctaatgtcaattaataattacttaaaCATTCTGTCATGAGTGATATTAATTAAAGTACCTTCATTTTAAAGTAACTGTTACCCGTTAAACATTTATGTacagagctctggaaaaaaataagagaccacttaaaaattatgagcttGATTTTATGatgctttgtttttaccaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230158.2 True 2266 mRNA 0.46 5 13813398 13827899

Neighbor

gene id symbol gene type direction distance location
LOC103027614 LOC103027614 coding downstream 6069 13799521 ~ 13807329 (-)
mpdz mpdz coding downstream 934378 12816580 ~ 12879020 (-)
LOC103046990 rasgrp2,LOC108427446,LOC108261011,LOC106608563 coding downstream 1052467 12707652 ~ 12760931 (-)
LOC103040758 LOC108427447 coding downstream 1288078 11673093 ~ 12525320 (-)
cfap36 cfap36 coding downstream 2185924 11613656 ~ 11627474 (-)
drap1 drap1,LOC106608686 coding upstream 222831 14050730 ~ 14058635 (-)
lurap1l lurap1l coding upstream 359777 14187676 ~ 14198597 (-)
LOC103033946 tyrp1,tyrp-1,LOC108260967,LOC105903131 coding upstream 372324 14200223 ~ 14207686 (-)
LOC103042598 crgm2,LOC103042598,LOC108427435,LOC108427436,LOC108260664,LOC108260584,LOC108260580,LOC108441183,LOC108260581 coding upstream 510815 14338714 ~ 14340598 (-)
LOC103043225 NA coding upstream 1431478 15259377 ~ 15261518 (-)
G184338 NA non-coding downstream 83455 13724758 ~ 13729943 (-)
G184330 NA non-coding downstream 135620 13676337 ~ 13677778 (-)
G184256 NA non-coding downstream 193562 13619632 ~ 13619836 (-)
LOC111195153 NA non-coding downstream 194773 13615683 ~ 13618625 (-)
LOC111195158 NA non-coding downstream 207815 13603276 ~ 13605583 (-)
G184354 heatr5b non-coding upstream 6882 13834781 ~ 13836418 (-)
G184396 NA non-coding upstream 100207 13928106 ~ 13928313 (-)
G184422 LOC104965148,LOC104966956,LOC103385808 non-coding upstream 300629 14128528 ~ 14131095 (-)
LOC111195216 NA non-coding upstream 352206 14180105 ~ 14185344 (-)
G184447 NA non-coding upstream 508047 14335946 ~ 14336641 (-)
LOC111195226 NA other downstream 218645 13551132 ~ 13594753 (-)
LOC111195225 NA other downstream 509718 13226333 ~ 13303680 (-)
G184051 NA other downstream 1616740 12195212 ~ 12196658 (-)
gtf2a1l NA other downstream 2401754 11402707 ~ 11411644 (-)
G183880 NA other downstream 2506577 11306289 ~ 11306821 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other upstream 160910 13988809 ~ 14040245 (-)
LOC103032041 NA other upstream 235745 14063644 ~ 14116456 (-)
trnas-gcu_5 NA other upstream 261807 14089706 ~ 14089787 (-)
trnas-gcu_6 NA other upstream 263610 14091509 ~ 14091590 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other upstream 1481610 15309509 ~ 15340580 (-)

Expression


Co-expression Network