LOC103041667 (ldb2b,LOC108434309,LOC107562611,LOC107750444,LOC108260957,LOC107548319,LOC107671914,LOC107702407)


Basic Information

Item Value
gene id LOC103041667
gene name ldb2b,LOC108434309,LOC107562611,LOC107750444,LOC108260957,LOC107548319,LOC107671914,LOC107702407
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15332135 ~ 15352286 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230211.2
GCGGGTGCGCTAGACGTGTCACTCGTATCTTGCAGTGTCCGCgcgcgcctctctctctctctctctctctctcactgtcactcgctctgtctcgcGCTCACTCTCCCTTCgtctgcgtgcgtgtgtgtgtgtgcgtgcgtgcccGTGTTTACGAGAGCGCAGCGCTCCACGTGCGTCCTACAGCGCGGGGCTCGCGCAGCAGCAGCGATGAGCGGCGGCGCTCCGCCGCGAGACCCCTTCTACGCCTCCCCGTTCGGCCCGTTCTACCGGAGGCACGCGCCGTGCGCCGTCCAGCCCGACTACCGCATGCACGAGCTCAATAAACGCCTGCAGTCTCGCACTGAGGACTGTGATATTCTATGGTGGGATGCCTTCTGCACAGAGTTTTTTGAAGAGGATGCTACGCTAACCCTGTCGTTCTGCTTGGAAGAAGGACCAAAGACTTACACAATCGGACGGGCACTCATCCCTCGCTTTTTCAGCACGCTGTTTGAGGGAGGAGTGTATGAGTTGTTTTTTGAGTTAAAACACACGAAAGAGTCGTTCAACAACTCCACCATCACTGTAGACTGCCACCAGTGCACCATGGTCACACAGCACGGCAAGCCAACTTTCGCCAagGTCTGCACGGAGGGACGTCTGATTTTGGTGTTCACCTTTGATGACCTCATGAGAATCAAAACGTGGCATTTCACAATCTCGCACTACAGTGAGCTCATCCCTCGCAGTGTGCTGGCTGTTCACGCACAAGACCCTGGAGCTCTGGAGCAACTGTCCAAAAACATCAGCAGAGTGGGACTAAGCAATCTCACACTGAACTACCTCAGATTGTGTATGATCCTGGAGCCAATGCAGGAGTTGATGTCGAGGCATAAAACGTACGGCTTGAGTCCACGGGACTGTCTGAAGACCTGCCTCTTCCACCAGTGGCAGAGAATGACCACACcaccagTTGGACCCTCGCCCAGCTTTAAGACAGAAATATTCCAATCAAATCCCAAAAAAGCAGAACCAGCCAAACCCACAgcgaagagaagaagaaggcgGAACTCGGCCGGCAGCGCATCCGGTAACACCACAGGAAACAGCAAAAAGCGCAGCCCAGCCAACAGCTTCAGCCTGCCCACACAGGATGTGATGATGGTAGGCGAGCCGTCTCTGATGGGCGGGGACGTGGGGGGCGTGGACGAGCGTTTGATCACGAGGCTGGAGAACGAACAGTATGACCCCACCAACGGTCTCCATGACGATGATCTCCACGACTATGCCAACTCACAGGCGCTCAGCAACGGCAGCCCCTGGAACGGCCAGCCCCCTGGCAACCAGGACAGCCAGCCTGATACCATGGCAACCCAGCCGCTGGAGTAACGTGAACTGACAGTGGGTTGCTATGGAAACGGAGGGATGGGAGCGCTCATCTGGGGACGGAGAAaaaggaggagtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcgcacGTTTGCGTATGCTTGCGTGAATGAGGACGTGACATATGATGTCATCCATACGTAAAACTCTTACATCAGCTTTCACAGAGACTGAAACCAGTAATAAAAAACCCAGTTCCAGCACACATTCCATCACTGAACCAGTAAGAGTTCAGATCTCACTGGCTGCTCTATAAATACGCTGCGCTGTTTACTGACTTCACACCGCAATTTTTACGCTATCTGGATGACGTAATTCTGTTCTGCGATTTTCGGTTTGGCTTTGTTTTCTgaagttgatgataatgttctGTGTGGATAtggtattgtttgttttttatgggCGTAACTGCAGACTTTACCcctttattaattaatacttAAACGTATGATGTATAATTATACCTGCAGGTATTTGTATTTACCATTCAGTGTGTATTTTCTGTATGCTTTTCAATTATTCGCATCAATAAACTGTGTTCGGTTATGATGACAAGGCCAGCGCTTTCGTTACTCGCGCaagttatttaatatttattgaatCGTTACTGaattcaataaaacattttcagtaaaGTGCAAAACA
>XM_007230212.2
GCGGGTGCGCTAGACGTGTCACTCGTATCTTGCAGTGTCCGCgcgcgcctctctctctctctctctctctctcactgtcactcgctctgtctcgcGCTCACTCTCCCTTCgtctgcgtgcgtgtgtgtgtgtgcgtgcgtgcccGTGTTTACGAGAGCGCAGCGCTCCACGTGCGTCCTACAGCGCGGGGCTCGCGCAGCAGCAGCGATGAGCGGCGGCGCTCCGCCGCGAGACCCCTTCTACGCCTCCCCGTTCGGCCCGTTCTACCGGAGGCACGCGCCGTGCGCCGTCCAGCCCGACTACCGCATGCACGAGCTCAATAAACGCCTGCAGTCTCGCACTGAGGACTGTGATATTCTATGGTGGGATGCCTTCTGCACAGAGTTTTTTGAAGAGGATGCTACGCTAACCCTGTCGTTCTGCTTGGAAGAAGGACCAAAGACTTACACAATCGGACGGGCACTCATCCCTCGCTTTTTCAGCACGCTGTTTGAGGGAGGAGTGTATGAGTTGTTTTTTGAGTTAAAACACACGAAAGAGTCGTTCAACAACTCCACCATCACTGTAGACTGCCACCAGTGCACCATGGTCACACAGCACGGCAAGCCAACTTTCGCCAagGTCTGCACGGAGGGACGTCTGATTTTGGTGTTCACCTTTGATGACCTCATGAGAATCAAAACGTGGCATTTCACAATCTCGCACTACAGTGAGCTCATCCCTCGCAGTGTGCTGGCTGTTCACGCACAAGACCCTGGAGCTCTGGAGCAACTGTCCAAAAACATCAGCAGAGTGGGACTAAGCAATCTCACACTGAACTACCTCAGATTGTGTATGATCCTGGAGCCAATGCAGGAGTTGATGTCGAGGCATAAAACGTACGGCTTGAGTCCACGGGACTGTCTGAAGACCTGCCTCTTCCACCAGTGGCAGAGAATGACCACACcaccagTTGGACCCTCGCCCAGCTTTAAGACAGAAATATTCCAATCAAATCCCAAAAAAGCAGAACCAGCCAAACCCACAgcgaagagaagaagaaggcgGAACTCGGCCGGCAGCGCATCCGGTAACACCACAGGAAACAGCAAAAAGCGCAGCCCAGCCAACAGCTTCAGCCTGCCCACACAGCCCAAACGTGTCGCCGGGGAAACGAGGGGCGGCGGGTGGCTGGAGGCGGAGCTTAGGATGTGATGATGGTAGGCGAGCCGTCTCTGATGGGCGGGGACGTGGGGGGCGTGGACGAGCGTTTGATCACGAGGCTGGAGAACGAACAGTATGACCCCACCAACGGTCTCCATGACGATGATCTCCACGACTATGCCAACTCACAGGCGCTCAGCAACGGCAGCCCCTGGAACGGCCAGCCCCCTGGCAACCAGGACAGCCAGCCTGATACCATGGCAACCCAGCCGCTGGAGTAACGTGAACTGACAGTGGGTTGCTATGGAAACGGAGGGATGGGAGCGCTCATCTGGGGACGGAGAAaaaggaggagtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcgcacGTTTGCGTATGCTTGCGTGAATGAGGACGTGACATATGATGTCATCCATACGTAAAACTCTTACATCAGCTTTCACAGAGACTGAAACCAGTAATAAAAAACCCAGTTCCAGCACACATTCCATCACTGAACCAGTAAGAGTTCAGATCTCACTGGCTGCTCTATAAATACGCTGCGCTGTTTACTGACTTCACACCGCAATTTTTACGCTATCTGGATGACGTAATTCTGTTCTGCGATTTTCGGTTTGGCTTTGTTTTCTgaagttgatgataatgttctGTGTGGATAtggtattgtttgttttttatgggCGTAACTGCAGACTTTACCcctttattaattaatacttAAACGTATGATGTATAATTATACCTGCAGGTATTTGTATTTACCATTCAGTGTGTATTTTCTGTATGCTTTTCAATTATTCGCATCAATAAACTGTGTTCGGTTATGATGACAAGGCCAGCGCTTTCGTTACTCGCGCaagttatttaatatttattgaatCGTTACTGaattcaataaaacattttcagtaaaGTGCAAAACA
>XM_022681993.1
GCGGGTGCGCTAGACGTGTCACTCGTATCTTGCAGTGTCCGCgcgcgcctctctctctctctctctctctctcactgtcactcgctctgtctcgcGCTCACTCTCCCTTCgtctgcgtgcgtgtgtgtgtgtgcgtgcgtgcccGTGTTTACGAGAGCGCAGCGCTCCACGTGCGTCCTACAGCGCGGGGCTCGCGCAGCAGCAGCGATGAGCGGCGGCGCTCCGCCGCGAGACCCCTTCTACGCCTCCCCGTTCGGCCCGTTCTACCGGAGGCACGCGCCGTGCGCCGTCCAGCCCGACTACCGCATGCACGAGCTCAATAAACGCCTGCAGTCTCGCACTGAGGACTGTGATATTCTATGGTGGGATGCCTTCTGCACAGAGTTTTTTGAAGAGGATGCTACGCTAACCCTGTCGTTCTGCTTGGAAGAAGGACCAAAGACTTACACAATCGGACGGGCACTCATCCCTCGCTTTTTCAGCACGCTGTTTGAGGGAGGAGTGTATGAGTTGTTTTTTGAGTTAAAACACACGAAAGAGTCGTTCAACAACTCCACCATCACTGTAGACTGCCACCAGTGCACCATGGTCACACAGCACGGCAAGCCAACTTTCGCCAagGTCTGCACGGAGGGACGTCTGATTTTGGTGTTCACCTTTGATGACCTCATGAGAATCAAAACGTGGCATTTCACAATCTCGCACTACAGTGAGCTCATCCCTCGCAGTGTGCTGGCTGTTCACGCACAAGACCCTGGAGCTCTGGAGCAACTGTCCAAAAACATCAGCAGAGTGGGACTAAGCAATCTCACACTGAACTACCTCAGATTGTGTATGATCCTGGAGCCAATGCAGGAGTTGATGTCGAGGCATAAAACGTACGGCTTGAGTCCACGGGACTGTCTGAAGACCTGCCTCTTCCACCAGTGGCAGAGAATGACCACACcaccagTTGGACCCTCGCCCAGCTTTAAGACAGAAATATTCCAATCAAATCCCAAAAAAGAACCAGCCAAACCCACAgcgaagagaagaagaaggcgGAACTCGGCCGGCAGCGCATCCGGTAACACCACAGGAAACAGCAAAAAGCGCAGCCCAGCCAACAGCTTCAGCCTGCCCACACAGGATGTGATGATGGTAGGCGAGCCGTCTCTGATGGGCGGGGACGTGGGGGGCGTGGACGAGCGTTTGATCACGAGGCTGGAGAACGAACAGTATGACCCCACCAACGGTCTCCATGACGATGATCTCCACGACTATGCCAACTCACAGGCGCTCAGCAACGGCAGCCCCTGGAACGGCCAGCCCCCTGGCAACCAGGACAGCCAGCCTGATACCATGGCAACCCAGCCGCTGGAGTAACGTGAACTGACAGTGGGTTGCTATGGAAACGGAGGGATGGGAGCGCTCATCTGGGGACGGAGAAaaaggaggagtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcgcacGTTTGCGTATGCTTGCGTGAATGAGGACGTGACATATGATGTCATCCATACGTAAAACTCTTACATCAGCTTTCACAGAGACTGAAACCAGTAATAAAAAACCCAGTTCCAGCACACATTCCATCACTGAACCAGTAAGAGTTCAGATCTCACTGGCTGCTCTATAAATACGCTGCGCTGTTTACTGACTTCACACCGCAATTTTTACGCTATCTGGATGACGTAATTCTGTTCTGCGATTTTCGGTTTGGCTTTGTTTTCTgaagttgatgataatgttctGTGTGGATAtggtattgtttgttttttatgggCGTAACTGCAGACTTTACCcctttattaattaatacttAAACGTATGATGTATAATTATACCTGCAGGTATTTGTATTTACCATTCAGTGTGTATTTTCTGTATGCTTTTCAATTATTCGCATCAATAAACTGTGTTCGGTTATGATGACAAGGCCAGCGCTTTCGTTACTCGCGCaagttatttaatatttattgaatCGTTACTGaattcaataaaacattttcagtaaaGTGCAAAACA

Function

symbol description
ldb2b Predicted to enable LIM domain binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; nervous system development; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in fin bud; head; paraxial mesoderm; spinal cord neural tube; and telencephalon. Orthologous to human LDB2 (LIM domain binding 2).

NR:

description
PREDICTED: LIM domain-binding protein 2-like isoform X3

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003712 transcription coregulator activity molecular_function
GO:0030274 LIM domain binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230211.2 False 2033 mRNA 0.51 9 15332135 15352286
XM_007230212.2 True 2089 mRNA 0.52 10 15332135 15352286
XM_022681993.1 False 2030 mRNA 0.51 9 15332135 15352286

Neighbor

gene id symbol gene type direction distance location
LOC103042179 NA coding downstream 28220 15265108 ~ 15303915 (-)
LOC103043225 NA coding downstream 70617 15259377 ~ 15261518 (-)
LOC103042598 crgm2,LOC103042598,LOC108427435,LOC108427436,LOC108260664,LOC108260584,LOC108260580,LOC108441183,LOC108260581 coding downstream 991537 14338714 ~ 14340598 (-)
LOC103033946 tyrp1,tyrp-1,LOC108260967,LOC105903131 coding downstream 1124449 14200223 ~ 14207686 (-)
lurap1l lurap1l coding downstream 1133538 14187676 ~ 14198597 (-)
LOC103041363 qdpr,dhpr,qdprb1,LOC108437732,LOC107750446,LOC107702409,LOC107562607 coding upstream 14823 15367109 ~ 15372437 (-)
LOC103043828 LOC108437730 coding upstream 76107 15428393 ~ 15560832 (-)
rfc1 rfc1,LOC102787736 coding upstream 263808 15616094 ~ 15630005 (-)
rpl9 rpl9,LOC107671920,LOC107700291,LOC107709470 coding upstream 279968 15632254 ~ 15637092 (-)
ugdh ugdh,LOC107757604 coding upstream 292852 15645138 ~ 15659566 (-)
LOC103043324 NA non-coding downstream 279265 15047747 ~ 15052870 (-)
LOC111195232 NA non-coding downstream 330562 14953444 ~ 15001573 (-)
G184447 NA non-coding downstream 995494 14335946 ~ 14336641 (-)
LOC111195216 NA non-coding downstream 1146791 14180105 ~ 14185344 (-)
G184422 LOC104965148,LOC104966956,LOC103385808 non-coding downstream 1201040 14128528 ~ 14131095 (-)
G184818 NA non-coding upstream 20486 15372772 ~ 15379206 (-)
G184816 gtf2e2,LOC107671915,LOC107548363 non-coding upstream 32428 15384714 ~ 15387101 (-)
LOC111195235 NA non-coding upstream 60381 15412667 ~ 15419207 (-)
G184836 NA non-coding upstream 212336 15564622 ~ 15564883 (-)
G184853 NA non-coding upstream 308381 15660667 ~ 15664885 (-)
LOC103032041 NA other downstream 1215679 14063644 ~ 14116456 (-)
trnas-gcu_6 NA other downstream 1240545 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 1242348 14089706 ~ 14089787 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other downstream 1291890 13988809 ~ 14040245 (-)
LOC111195226 NA other downstream 1737382 13551132 ~ 13594753 (-)
smim18 smim18 other upstream 24372 15376658 ~ 15381208 (-)
smim14 smim14 other upstream 313825 15666111 ~ 15671954 (-)
lrat lrat other upstream 1545892 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 1877799 17230085 ~ 17241027 (-)
G185295 NA other upstream 1899981 17252267 ~ 17254633 (-)

Expression


Co-expression Network