lrat (lrat)


Basic Information

Item Value
gene id lrat
gene name lrat
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 16898178 ~ 16901684 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230283.3
CAGAGCCTGcctcacactccctcacacctCCCTGCAGCCCCACCATGCTGGACTCGCTGACCTTCCTGCTGGAGAAGCTCTTTCTCCTCACCAACTTCTCCCTCATCTTCAGGAAGAGCTGGCCTTCAGACGACTGCTCCCCCAAATCCGCACCAACCGTGCCAACAGTGCCCCCTATCCGCAGAGGCGACCTGCTGGAGGTGCAGCGCACGCTCTTCGTCCACTTCGGCATCTACCTGGGCGACAACAAGGTGGCGCACCTGATGCCGGACATCATGCCGGTGCTGACCAACGACCCCAAGGTGGTCCACACGGTGGTGACCAATAAGAGGCTGATCCTGGGCTGTATCTATAGAAACGCCAGTGTGCGCGTGGACTCGGTGGAGGACTTTGCGTACGGTGCTAATATTATCGTAAACGACATGGACAGGAAAATGAAAAATCCCGCCATATCTAACGAAGACGTAGCGAGAAGAGCGGAGAAGCTGATTGGTGCAATTCCCTACAGCTTGCTTTGGAATAACTGTGAACATTTCGTTACCTACTGCAGGTACGGAGCAGCGGTGAGCCAACAAACCGAGAAGTTCTGCACGGGTCTGAAGGCGGCTATCCGGGATCAGAGAAGCGTTCTCCTGACGGTGCTGCTGGGAGTGATGTCCATCATCTGCTTCGGCCCCGCCCCCTGCACCACCCTGCCCACCATCTTCATCCCCTTCACTCTGTGGATGGCAGGCTGAGCAGCAGCTCACACACCAGCTCCTGAACCAACTCCACCCGTGTTCTTACAGTACAGCAGCCTCTGACCCCGCCCAAACTCACACTCAGCACCAGCAgtaccatcatcaccaccaccaacatcaccaacatcaccacaGAGCCACGCCATGCTGACCCACACCCTTATAAACCAACAGCCAGGCTCTGAATATCACCAcca
>XR_002651564.1
CAGAGCCTGcctcacactccctcacacctCCCTGCAGCCCCACCATGCTGGACTCGCTGACCTTCCTGCTGGAGAAGCTCTTTCTCCTCACCAACTTCTCCCTCATCTTCAGGAAGAGCTGGCCTTCAGACGACTGCTCCCCCAAATCCGCACCAACCGTGCCAACAGTGCCCCCTATCCGCAGAGGCGACCTGCTGGAGGTGCAGCGCACGCTCTTCGTCCACTTCGGCATCTACCTGGGCGACAACAAGGTGGCGCACCTGATGCCGGACATCATGCCGGTGCTGACCAACGACCCCAAGGTGGTCCACACGGTGGTGACCAATAAGAGGCTGATCCTGGGCTGTATCTATAGAAACGCCAGTGTGCGCGTGGACTCGGTGGAGGACTTTGCGTACGGTGCTAATATTATCGTAAACGACATGGACAGGAAAATGAAAAATCCCGCCATATCTAACGAAGACGTAGCGAGAAGAGCGGAGAAGCTGATTGGTGCAATTCCCTACAGCTTGCTTTGGAATAACTGTGAACATTTCGTTACCTACTGCAGGTACGGAGCAGCGGTGAGCCAACAAACCGAGAAGTTCTGCACGGGTCTGAAGGCGGCTATCCGGGATCAGAGAAGCGTTCTCCTGACGGTGCTGCTGGGAGTGATGTCCATCATCTGCTTCGGCCCCGCCCCCTGCACCACCCTGCCCACCATCTTCATCCCCTTCACTCTGTGGATGGCAGGCTGAGCAGCAGCTCACACACCAGCTCCTGAACCAACTCCACCCGTGTTCTTACAGTACAGCAGCCTCTGACCCCGCCCAAACTCACACTCAGCACCAGCAgtaccatcatcaccaccaccaacatcaccaacatcaccacaGAGCCACGCCATGCTGACCCACACCCTTATAAACCAACAGCCAGGCTCTGAATATCACCACCAAAAAAAGATGAGCGCACAGCGTCATAACGAGATCATTTTGGATGATCTTTCATCACAGAATTGAGAattgtataatatattgttaatataatagcatattatattttacaagGATTTTTAATTAGGGACATAAGGGGTGGAATCTaaagagtgaaaaaaataattaaaaatttggCTGAATACTGaattgtgaaaaatatatatatatttttttgtttcaccaTTGCATAATTTACATggcctaaatgttttttttttttgttgatattcaaagaaaaaaacaatacaaaactacaatttcacaatatttattaaaaccagaTTTGATCACATCATCATAAACGTCATTGTTCAGCataaattattactttttacttaaACGGCCGAATGCTGGAAatgcttttttgccatttttgacCAAATAaattggttgccaaatatttggtgtgtcctctttttaaattattgtccctatatcacacacacacacacacacacacacagtagctaCTATTTAAGGAACAGTGAGAACGGACTCATGGCTGATGTGTCTGGGAGAGAATGTCCTGTACGATTGTTAATAGTGCCTTATTTATAACACACTGAATGTCCCTTTACTTTATTCTGTACATAGTTTGCATATAAGAGACTTGTATTTGCACATAATCACCTTTATTTTGTAAGCACTGATGAGAGCGGACTGTAAATCTGTATTGTACAgtagtgtatatttttaatactgaaTCTTTGtatagtataataaaaatatttacaaaaacaaaaaaa

Function

symbol description
lrat Enables phosphatidylcholine-retinol O-acyltransferase activity. Involved in retinol metabolic process. Predicted to be located in multivesicular body; perinuclear region of cytoplasm; and rough endoplasmic reticulum. Implicated in Leber congenital amaurosis 14 and retinitis pigmentosa.

NR:

description
PREDICTED: lecithin retinol acyltransferase

GO: NA

KEGG:

id description
K00678 LRAT; phosphatidylcholine-retinol O-acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230283.3 False 937 mRNA 0.57 2 16899050 16901684
XR_002651564.1 True 1723 misc_RNA 0.44 3 16898178 16901684

Neighbor

gene id symbol gene type direction distance location
npy2r npy2r,LOC107700264 coding downstream 23697 16871017 ~ 16874481 (-)
gucy1a3 gucy1a3,LOC107572203,LOC107695445,LOC107700279,LOC107598251 coding downstream 70824 16804577 ~ 16827354 (-)
gucy1b3 gucy1b3,LOC107714654,LOC107757623 coding downstream 99430 16765427 ~ 16798748 (-)
fabp2 fabp2,LOC108434304,LOC107714631,LOC107572697,LOC107700317,LOC107695844 coding downstream 141279 16750652 ~ 16756899 (-)
trnar-ccu_39 NA coding downstream 255447 16642659 ~ 16642731 (-)
fhdc1 fhdc1 coding upstream 141191 17042875 ~ 17059662 (-)
LOC103033731 arfip1,LOC108260818,LOC108434328,LOC107745866 coding upstream 187470 17089154 ~ 17113139 (-)
sfrp2 sfrp2 coding upstream 216368 17118052 ~ 17124751 (-)
LOC103027395 ptprdb,LOC107754148 coding upstream 528278 17429962 ~ 17501430 (-)
rbm47 rbm47,LOC107702361,LOC107754149,LOC107746010,LOC107656158 coding upstream 704421 17606105 ~ 17652838 (-)
G185033 NA non-coding downstream 33972 16857391 ~ 16864206 (-)
G185027 NA non-coding downstream 65401 16832466 ~ 16832777 (-)
G184993 NA non-coding downstream 194685 16647410 ~ 16703493 (-)
G185012 myoz2,LOC107695402,LOC103360806,LOC102203409,LOC100711322 non-coding downstream 196870 16699724 ~ 16701308 (-)
G185000 NA non-coding downstream 216321 16677975 ~ 16681857 (-)
G185041 fgg,LOC106602564 non-coding upstream 19352 16921036 ~ 16922494 (-)
G185073 NA non-coding upstream 64325 16966009 ~ 16969764 (-)
G185079 NA non-coding upstream 130447 17032131 ~ 17032392 (-)
G185280 NA non-coding upstream 303057 17204741 ~ 17216109 (-)
G185328 NA non-coding upstream 455744 17357428 ~ 17360299 (-)
smim14 smim14 other downstream 1226224 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 1516970 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 1557598 15309509 ~ 15340580 (-)
LOC103032041 NA other downstream 2781722 14063644 ~ 14116456 (-)
LOC103032582 NA other upstream 328401 17230085 ~ 17241027 (-)
G185295 NA other upstream 350583 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 393817 17295501 ~ 17300782 (-)
nutm1 NA other upstream 411686 17313370 ~ 17328889 (-)
G185321 NA other upstream 428334 17330018 ~ 17331954 (-)

Expression


Co-expression Network