LOC103043225


Basic Information

Item Value
gene id LOC103043225
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15259377 ~ 15261518 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230302.3
TTGTCCATACGTCCAACCCCCTCtgcacactgctcagccacaCTCCGGCCTGTCAACACCACTGTCCGGGACCCCGTCTCCACTCCTGCACCATGAGGGTAACGTGCAGCACCGTTCTCCTGCTGGCTTGCTGTGTTTGGGTCATTCATGCCCAAGCCCAGAGCAGCCAAAGCGTTGCTAACCAAGATAACAGCAACCAGGCTAACGTACATGCCAACGAAAGCACGCCCAGCCTTCCAAGCAAGGCCAAGCAAGAGCCCCAACAGCCAAACAGCGTCTGGGACGAGCCCATCCGCTTCAGCTCCAAAGCCAAGGACTCCTGCACGCTGGTGATCTCTGGCCAAGGAGACTTCACCAAGCTTCGGGTCTCCTGCAAGAACAAGGGCAAGTCCTACTGGTGCGACTTCCTGGGCAAGCCCAACCTGTGCCGGCCTTACAACAAAAACCCACGCCATTACTTCACCCAGGTCATGTGGGAGCTGCGCAAGCTCCCCAACGCCTGCCAGGGACCCCGCGTCTACAAGCCACAGATGTGCCGCACAGCTGGGGATGAAGCTCAGATGGTCTTCCACAATTCCTGGCCTAAGACAACCACCTCAGCGCCAGTGACGGCTCCGCAGGACCGCAGCCAAAGCCAGCCGAAACAACCACAGCCACCCAAGACCAGCGCCACCCCCAAACCACCAACCGCGGCCAAAGCCGTCCCCAAAACCCCCAAACAACCCACCAAACCTGTGCTGCCCCGCAAGCCCAGCAAGACCACCACAGCAAAACCCACCACAGAACCAGAGAACCGAGCTACTAAACTGGCAGAGGAGTACTGCTGGAGCGGCATCCAGAACGTCTGCGCCTATTTCATCGGCTGGTTTCTAAACCAGTAACTACTTACACTGGCCCACAGTATAGGAGACTTTCAGAGTCTTCTGGACCTCCAGCCAAGTCATCCCCCAGGGAcctgaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcctatgTATGTATGTCAGAAAACCTCGGTTAACACTAACATCCTTAACAAGAAAAAGTGATAgaatatttttctaattttgtatttttagtttggagcaataataaaaatcttttttttaattaaatacaaatttctGTTCAATAATTGAGATAACACTTTGTGGTAATAACGAaccacaaatgaaaaaaaaaaaactgttgtaaaaaGTTATGTAATTCCATTCAATAAGACCTCTGAAACTACATTTTCTGGAAATACTATACTAACCTAAGAAAATACCATAGAAAACAACGTGTTGAGTGATTTGCGCATAAAAATCCATACTAGTGAACGAAACAGTTCTCTCTAGTGGATCACTTTAGACTACAGACTTATGTTGATTGTTGGAGATTGTCAGGTTGGGTTTagttgaacacatttaataaacataGATTATGGTGTTATGTATCACTAATACTTTTCACTGCTGAGAATTAGTGAACAGTATGAACACTCTTTTAACTTTGATGTTTCTGACATTTCTATATCTGACAGtggtattctttttttaatgtaaatttgtaataaaattaacattgaccttc

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230302.3 True 1577 mRNA 0.47 2 15259377 15261518

Neighbor

gene id symbol gene type direction distance location
LOC103042598 crgm2,LOC103042598,LOC108427435,LOC108427436,LOC108260664,LOC108260584,LOC108260580,LOC108441183,LOC108260581 coding downstream 918779 14338714 ~ 14340598 (-)
LOC103033946 tyrp1,tyrp-1,LOC108260967,LOC105903131 coding downstream 1051691 14200223 ~ 14207686 (-)
lurap1l lurap1l coding downstream 1060780 14187676 ~ 14198597 (-)
drap1 drap1,LOC106608686 coding downstream 1200742 14050730 ~ 14058635 (-)
LOC103028152 NA coding downstream 1431478 13813398 ~ 13827899 (-)
LOC103042179 NA coding upstream 3590 15265108 ~ 15303915 (-)
LOC103041667 ldb2b,LOC108434309,LOC107562611,LOC107750444,LOC108260957,LOC107548319,LOC107671914,LOC107702407 coding upstream 70617 15332135 ~ 15352286 (-)
LOC103041363 qdpr,dhpr,qdprb1,LOC108437732,LOC107750446,LOC107702409,LOC107562607 coding upstream 105591 15367109 ~ 15372437 (-)
LOC103043828 LOC108437730 coding upstream 166875 15428393 ~ 15560832 (-)
rfc1 rfc1,LOC102787736 coding upstream 354576 15616094 ~ 15630005 (-)
LOC103043324 NA non-coding downstream 206507 15047747 ~ 15052870 (-)
LOC111195232 NA non-coding downstream 257804 14953444 ~ 15001573 (-)
G184447 NA non-coding downstream 922736 14335946 ~ 14336641 (-)
LOC111195216 NA non-coding downstream 1074033 14180105 ~ 14185344 (-)
G184422 LOC104965148,LOC104966956,LOC103385808 non-coding downstream 1128282 14128528 ~ 14131095 (-)
G184818 NA non-coding upstream 111254 15372772 ~ 15379206 (-)
G184816 gtf2e2,LOC107671915,LOC107548363 non-coding upstream 123196 15384714 ~ 15387101 (-)
LOC111195235 NA non-coding upstream 151149 15412667 ~ 15419207 (-)
G184836 NA non-coding upstream 303104 15564622 ~ 15564883 (-)
G184853 NA non-coding upstream 399149 15660667 ~ 15664885 (-)
LOC103032041 NA other downstream 1142921 14063644 ~ 14116456 (-)
trnas-gcu_6 NA other downstream 1167787 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 1169590 14089706 ~ 14089787 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other downstream 1219132 13988809 ~ 14040245 (-)
LOC111195226 NA other downstream 1664624 13551132 ~ 13594753 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other upstream 47991 15309509 ~ 15340580 (-)
smim18 smim18 other upstream 115140 15376658 ~ 15381208 (-)
smim14 smim14 other upstream 404593 15666111 ~ 15671954 (-)
lrat lrat other upstream 1636660 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 1968567 17230085 ~ 17241027 (-)

Expression


Co-expression Network