LOC103037959


Basic Information

Item Value
gene id LOC103037959
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 3536363 ~ 3550525 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232786.3
TCTCTGTGGAACGTCACCGgcgtgtgtgtataatatatgtgagtgtgtatttgcGTTTAGTCGTAGAGGAGTTTTCTTATTACTCGTTAAATTAGATAAAGCCTCGGCGGCTCGTGTTTCAATTCGGCGGTGTGTCCCCTCACTCTGAGCCCTCCGCGCTGAGGGTCAGCGGGGGGTGAGTGAGCGGCGCGCGGGGTCGGAGCTCCAGGTCCAGATAAACACactcccagagagagagacgctgaGAGAGTGCAGCTGAAACTCACTCTGCAGAGCAGCACTGAGaaggTGGAGGTCGGTGATGACATCGGTGGTGTTGGTGGACAGTGGGGGACGGGTGGTGGAGTACATTACTGCAGTGGATGATATACAGCAGGTGGAGGGTGTGTGTGCGGTGGACGGTGTGTATGATGGTGTGTGTGATTACGCAGACGTGGTGGTGGAGCAggtggaggagtgtgtggaCGAGGTGTTGGTGTTTGATGATGCAGAGCTGATACAGGACGTGGCCGAGGAACAGGAAGTGGAGACTGAATCAGTGGAGACAGTGGAGGCGTCGGTGCACGGCGGCTACAGCTTGAGCTGTTCCGATAAAACCATCGAGGCGGCCGAAGCTCTGCTGCACATGGACTCGCCGTCCAGCTTACGAGGAGGCCGCAGCCCAGaggtGTTTGTGCCTCCATGTGTGTCAACTCCGGAATTTCTGCACGCTGCAATGCGACCTGACGTCGTCACAGAGACGGTGGTGGAGGTCAGTACGGAGGAGGCGGAGCCTATGGAGGTGGTGACCCTCATAGAGGAGCCACAGGTGCTggagagcagcaggaggaggaaagCTGGGAGAAAGCCGAAGCCCCACCCCATTTCAAACGGATCCCCCGATTTGGGCATAAAGAAAAAATCCAGAGAGGGCAAAGGAAGTACATACCTGTGGGAGTTTCTGCTGGACCTGCTGCAGGATAAGAACACCTGTCCCAGGTATATAAAGTGGACTCAGAGAGAAAAGGGCATCTTCAAGCTGGTGGACTCcaaagctgtgtccaaactgtGGGGAAAACACAAGAACAAACCCGACATGAACTACGAGACCATGGGCCGTGCCCTCAGgtattATTATCAGAGAGGGATTCTGTCGAAAGTCGAGGGGCAGCGCTTGGTGTATCAGTTTAAGGAGATGCCCAAGGACATTGTGGTAATcgatgatgaggaggaggatgatgaagatAAGTTTGACTCCAGCTGTGAGGATCTGCCCAGCGAGGTGTCGTGTGAGCGAGTGCTGACCACCGACTTTGCCAAGACCCACAGCATCCTGAGGGGGACGGGCTCGGCCGTGCTGCACACCCCCTCCCAAAGAAGCAACGTCTCGCTCGCAGCCACGCCCCTCCAGCGCATAGTGACGGTCTCTACGGCTACGGACGCAACGCAGCCATCCCATGCCACCATTATTTCTAACAACAGTGCacccagGACAGTCCGCGTTGCTATGCAGGTGCCAGTTGTCATGACGACCTCCTTGGGCCAAAAGATCTCCACGGTCGCTGTTCCGTCTGCTAACCCCCAACTCCTCACCGCGGCGACAGTGCCAACTAGTGTCACCACGGTGACTGGAGGCTCTGCCCCGCCCCAGAAGGTCCTGATCCAGACGGTTCCGGCAATGGAGAACGGAGAGAAGATCACAGTGCAGCTCGCCAAGATAATCACCATCCCCACAGCGCAGCTCACGCACTGCCAGCTGCAGCCCAAAGGGGGCGCTGCAGCTCCCGCCGGCTTCAGCCTGCTGGGGGCACCCCTGGCACTGCGCTCCATCACACCCACCGCACAGGTGGTCAGGCTAGCAGTGCCTGCCCAGGCGAGTCCAGCCCAGACGAGCCCCGTTCCCCGGCTTCAGAATGCAACCAATCCCGGCCTCGTCTCAGCCAGAAGCCCCACCCACACACCTCAAAACCTGCCCAGTCTCAGTCAGGTCCCAGTCAGAAACCCTAATCCCAACCCGTCCCAGAGCCCAATCCACACAGCCAATCCTGTCCTTCCTCGAAGCCCTGCCCCCACAGTTCAAATCGCTGCCAATCGGAATCCAGTTTCTGCTCACACTAGTCACACCCCTTCTTCAGCTACGGTACAGATCCAGGTCCAGCGTGTAGGAGAGTCAAAAGTGGATAGGGTGCCTCCTGCTGGACATACAGCAGCTCAAACCCAGCCAGAATCGACACCGCTGAGCTAGAGGTGGTGGactgtgaaaacacacacacacacacacacacacacacacacacacacagacacacactgctacacaaGCTGCGTTCCAAATGATGTAGGCTGTAGTCAAGGTAGGGTGGGTCCTTAGTGGGATTGTCTTGTGGCCAGACAATTGAAACAGTCTGGTGACGTGCAAGTGTGCATTTTTCATTTCCTCACAGAAAtcattttgaattttttttaagacaaacTCTGTAGCAGAGTCTTCATTTCTTGCCATTCTGGCTCCAGTTTTTGGATTGTTGATGGGTAAACGATGGccaggaaggatacatcagttgcgtccttCAAATCGCGCCAAACGCTTTCATTGGTACAGCGGCCAAGCAATGCAGCCTACCTAGTCTACAGCCTACACTTAAGCCCAATCTCATTTCAGTCCTTAGCCCAAACACTTAGCCCTATCCCGCTGTTTTGCACGTTCACGCCTAGGGGGAGGGGCTATAAGAAATGACTGGCAATGTGGAGACACAAGCCATCTTTTCctctacaaaaaaatataagctATATTGCTATAGTTTAATGCTAAGTTTTTCTTCATAACGAGAATAAAAAATCACTAGTAGTATGCCTAGCAGCATTtctcgttccaccttaaatgggaCAACAGACAGCAAtggctgcatcatttaaggtgatATGGGAAATGTAGCTATCTTGCCAACTAGCCACAATAAATGTTTTGCCAGGCAGCAGACGCTTTGGAAAATTTTAAATTATCTATCTTACCTTAAATCCAGCAGCTAGGTTGTCGCCCACAATCGTCCAATTATTTGGGCCTTGTCCCAATTCATAGGGAATTAGTTTCTCTTGTAACTTtattgctaaataaaacaaGGGTACGACAAGGGAAGGGGTACAAattagaaatgggattgggcctaacaCTTAGGAACGCAGCTCTTATCAGCGACCAGCGAATTAGTGCAGCCTCAGTGCTCCCCCTGGTGTTTGGCTGGTGTACGCAGAGTTTGTACAGTGGTCAGGATTGATCAGAGGGGTTTTAAGAATTCAGGAGGGGTCTTGCGATTAATTGAGTAAAAGGGACCAAAACAGCCTATACACTACAGTCCTAAAACACTACAGACACTACAGTAAATCTGAGAAGCACTACAGACTGCGACTGACCTGTACAGAAGAAAGACTCGAACCAAATGCGAACTGTTTCAGCCTGTAAATACGTCGTTTTGATATCCTGGAAagagaattttttttctctttattattattattaatactttttttttttttttgcatttttgatgCAAAAACCAGCAGCTCCGCCAGAACGGCCACTGTGAACGCAGTGTGGCCGAGAGCGACGGCAACACAGAGAATAGAAAAGGGAGAAAAAGGGAGGAATTGGAGggagttttattattttattttttttttaaaactctctctctctatttttctctctggaCCCGGCAGAAGAAAGCAGAAACGCTGTACATATTGACTCCGCGAATGAGCGACTCTGACATCACAGCCTTAGAACTCTTCTTTATCAGactttttatttacctttatttacGTATTCCagttttactacatttaaagcgacagttctgaaaaaaaaaaaaactccatcagTTAGACAATCAGGATTAAATCACATATGATTTAGTATTTCGGTTCTGGTATTTGGATCCAGAGTGAAGaaaagaattttaaaaaatatgtacgTGGATTTTAGCTGAACTGTCGCTTTAAGCTCGAGTATTATTAGCACATTGTACGTAGCGCAGTATTGCTGGCTAACGGGCAGCTCATCGTTTGTACATCCGTAGCCGTAGGGAGTGTGTGGAGTCTGTCCGGATCATTCAGATTAATCGGATCATCCGGATCACCGGTCAATGCCACACGCTCTGTTATGGTTCTCACCCCCACAGTAggaaaggtcaaaaggtcacaCCGTCTGTCCCCTTCACTTCTCTCCTCTCGGCACCGGTCTGGAGGAAGAGCGAGGCATCCGTGTTCAGAATGAACtagtttgtattattattcAACATTTGAAGTATATTCTATTTTGTTGTACTCTTGTTTCAAAGTGTATTCAAGTAGATtttactgaattattaaaaaaaaaaaagaatttccaCA
>XM_007232787.3
CGGGACTTCCTTTCCGGGCGGAAGGATCACCGGTAGTGCCGCAGCTCCTATGGAACATGGCGCTACACGAGGGAACCGAGACCCAGCTGGACCTGCTGATCCGGGCAGTGGAGGCGTCGGTGCACGGCGGCTACAGCTTGAGCTGTTCCGATAAAACCATCGAGGCGGCCGAAGCTCTGCTGCACATGGACTCGCCGTCCAGCTTACGAGGAGGCCGCAGCCCAGaggtGTTTGTGCCTCCATGTGTGTCAACTCCGGAATTTCTGCACGCTGCAATGCGACCTGACGTCGTCACAGAGACGGTGGTGGAGGTCAGTACGGAGGAGGCGGAGCCTATGGAGGTGGTGACCCTCATAGAGGAGCCACAGGTGCTggagagcagcaggaggaggaaagCTGGGAGAAAGCCGAAGCCCCACCCCATTTCAAACGGATCCCCCGATTTGGGCATAAAGAAAAAATCCAGAGAGGGCAAAGGAAGTACATACCTGTGGGAGTTTCTGCTGGACCTGCTGCAGGATAAGAACACCTGTCCCAGGTATATAAAGTGGACTCAGAGAGAAAAGGGCATCTTCAAGCTGGTGGACTCcaaagctgtgtccaaactgtGGGGAAAACACAAGAACAAACCCGACATGAACTACGAGACCATGGGCCGTGCCCTCAGgtattATTATCAGAGAGGGATTCTGTCGAAAGTCGAGGGGCAGCGCTTGGTGTATCAGTTTAAGGAGATGCCCAAGGACATTGTGGTAATcgatgatgaggaggaggatgatgaagatAAGTTTGACTCCAGCTGTGAGGATCTGCCCAGCGAGGTGTCGTGTGAGCGAGTGCTGACCACCGACTTTGCCAAGACCCACAGCATCCTGAGGGGGACGGGCTCGGCCGTGCTGCACACCCCCTCCCAAAGAAGCAACGTCTCGCTCGCAGCCACGCCCCTCCAGCGCATAGTGACGGTCTCTACGGCTACGGACGCAACGCAGCCATCCCATGCCACCATTATTTCTAACAACAGTGCacccagGACAGTCCGCGTTGCTATGCAGGTGCCAGTTGTCATGACGACCTCCTTGGGCCAAAAGATCTCCACGGTCGCTGTTCCGTCTGCTAACCCCCAACTCCTCACCGCGGCGACAGTGCCAACTAGTGTCACCACGGTGACTGGAGGCTCTGCCCCGCCCCAGAAGGTCCTGATCCAGACGGTTCCGGCAATGGAGAACGGAGAGAAGATCACAGTGCAGCTCGCCAAGATAATCACCATCCCCACAGCGCAGCTCACGCACTGCCAGCTGCAGCCCAAAGGGGGCGCTGCAGCTCCCGCCGGCTTCAGCCTGCTGGGGGCACCCCTGGCACTGCGCTCCATCACACCCACCGCACAGGTGGTCAGGCTAGCAGTGCCTGCCCAGGCGAGTCCAGCCCAGACGAGCCCCGTTCCCCGGCTTCAGAATGCAACCAATCCCGGCCTCGTCTCAGCCAGAAGCCCCACCCACACACCTCAAAACCTGCCCAGTCTCAGTCAGGTCCCAGTCAGAAACCCTAATCCCAACCCGTCCCAGAGCCCAATCCACACAGCCAATCCTGTCCTTCCTCGAAGCCCTGCCCCCACAGTTCAAATCGCTGCCAATCGGAATCCAGTTTCTGCTCACACTAGTCACACCCCTTCTTCAGCTACGGTACAGATCCAGGTCCAGCGTGTAGGAGAGTCAAAAGTGGATAGGGTGCCTCCTGCTGGACATACAGCAGCTCAAACCCAGCCAGAATCGACACCGCTGAGCTAGAGGTGGTGGactgtgaaaacacacacacacacacacacacacacacacacacacacagacacacactgctacacaaGCTGCGTTCCAAATGATGTAGGCTGTAGTCAAGGTAGGGTGGGTCCTTAGTGGGATTGTCTTGTGGCCAGACAATTGAAACAGTCTGGTGACGTGCAAGTGTGCATTTTTCATTTCCTCACAGAAAtcattttgaattttttttaagacaaacTCTGTAGCAGAGTCTTCATTTCTTGCCATTCTGGCTCCAGTTTTTGGATTGTTGATGGGTAAACGATGGccaggaaggatacatcagttgcgtccttCAAATCGCGCCAAACGCTTTCATTGGTACAGCGGCCAAGCAATGCAGCCTACCTAGTCTACAGCCTACACTTAAGCCCAATCTCATTTCAGTCCTTAGCCCAAACACTTAGCCCTATCCCGCTGTTTTGCACGTTCACGCCTAGGGGGAGGGGCTATAAGAAATGACTGGCAATGTGGAGACACAAGCCATCTTTTCctctacaaaaaaatataagctATATTGCTATAGTTTAATGCTAAGTTTTTCTTCATAACGAGAATAAAAAATCACTAGTAGTATGCCTAGCAGCATTtctcgttccaccttaaatgggaCAACAGACAGCAAtggctgcatcatttaaggtgatATGGGAAATGTAGCTATCTTGCCAACTAGCCACAATAAATGTTTTGCCAGGCAGCAGACGCTTTGGAAAATTTTAAATTATCTATCTTACCTTAAATCCAGCAGCTAGGTTGTCGCCCACAATCGTCCAATTATTTGGGCCTTGTCCCAATTCATAGGGAATTAGTTTCTCTTGTAACTTtattgctaaataaaacaaGGGTACGACAAGGGAAGGGGTACAAattagaaatgggattgggcctaacaCTTAGGAACGCAGCTCTTATCAGCGACCAGCGAATTAGTGCAGCCTCAGTGCTCCCCCTGGTGTTTGGCTGGTGTACGCAGAGTTTGTACAGTGGTCAGGATTGATCAGAGGGGTTTTAAGAATTCAGGAGGGGTCTTGCGATTAATTGAGTAAAAGGGACCAAAACAGCCTATACACTACAGTCCTAAAACACTACAGACACTACAGTAAATCTGAGAAGCACTACAGACTGCGACTGACCTGTACAGAAGAAAGACTCGAACCAAATGCGAACTGTTTCAGCCTGTAAATACGTCGTTTTGATATCCTGGAAagagaattttttttctctttattattattattaatactttttttttttttttgcatttttgatgCAAAAACCAGCAGCTCCGCCAGAACGGCCACTGTGAACGCAGTGTGGCCGAGAGCGACGGCAACACAGAGAATAGAAAAGGGAGAAAAAGGGAGGAATTGGAGggagttttattattttattttttttttaaaactctctctctctatttttctctctggaCCCGGCAGAAGAAAGCAGAAACGCTGTACATATTGACTCCGCGAATGAGCGACTCTGACATCACAGCCTTAGAACTCTTCTTTATCAGactttttatttacctttatttacGTATTCCagttttactacatttaaagcgacagttctgaaaaaaaaaaaaactccatcagTTAGACAATCAGGATTAAATCACATATGATTTAGTATTTCGGTTCTGGTATTTGGATCCAGAGTGAAGaaaagaattttaaaaaatatgtacgTGGATTTTAGCTGAACTGTCGCTTTAAGCTCGAGTATTATTAGCACATTGTACGTAGCGCAGTATTGCTGGCTAACGGGCAGCTCATCGTTTGTACATCCGTAGCCGTAGGGAGTGTGTGGAGTCTGTCCGGATCATTCAGATTAATCGGATCATCCGGATCACCGGTCAATGCCACACGCTCTGTTATGGTTCTCACCCCCACAGTAggaaaggtcaaaaggtcacaCCGTCTGTCCCCTTCACTTCTCTCCTCTCGGCACCGGTCTGGAGGAAGAGCGAGGCATCCGTGTTCAGAATGAACtagtttgtattattattcAACATTTGAAGTATATTCTATTTTGTTGTACTCTTGTTTCAAAGTGTATTCAAGTAGATtttactgaattattaaaaaaaaaaaagaatttccaCA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09428 ELF1_2_4; E74-like factor 1/2/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232786.3 True 4368 mRNA 0.49 9 3536363 3550525
XM_007232787.3 False 3928 mRNA 0.49 7 3540843 3550525

Neighbor

gene id symbol gene type direction distance location
LOC103037633 NA coding upstream 1311 3524196 ~ 3535052 (+)
LOC103038692 acsl1,acsl1a,LOC107562746,LOC107702334 coding upstream 99319 3399191 ~ 3437044 (+)
LOC103039527 NA coding upstream 155820 3344537 ~ 3380543 (+)
cfap97 NA coding upstream 199524 3323761 ~ 3336839 (+)
ufsp2 ufsp2,LOC107579280 coding upstream 234914 3290784 ~ 3301449 (+)
pcdh18 LOC108413018 coding downstream 264878 3815403 ~ 3827765 (+)
sclt1 sclt1 coding downstream 845290 4395815 ~ 4423038 (+)
LOC103036009 NA coding downstream 924208 4474733 ~ 4479749 (+)
LOC103036626 LOC108414886,LOC108414926,LOC108414927 coding downstream 947512 4498037 ~ 4506712 (+)
LOC103029042 chic2,LOC103029042,LOC108441324,LOC103353160,LOC101486940,LOC106602128 coding downstream 1391896 4942421 ~ 4948100 (+)
G182492 NA non-coding upstream 9390 3526280 ~ 3526973 (+)
LOC111195151 NA non-coding upstream 37669 3492464 ~ 3498694 (+)
G182396 NA non-coding upstream 55947 3478291 ~ 3480416 (+)
G182371 NA non-coding upstream 139103 3331203 ~ 3397260 (+)
G182507 NA non-coding downstream 109704 3660229 ~ 3660492 (+)
G182509 NA non-coding downstream 115336 3665861 ~ 3666103 (+)
G182510 NA non-coding downstream 115694 3666219 ~ 3666497 (+)
G182511 NA non-coding downstream 164084 3714609 ~ 3714820 (+)
G182530 NA non-coding downstream 359378 3909903 ~ 3917616 (+)
G182361 NA other upstream 246105 3287938 ~ 3290258 (+)
G182356 NA other upstream 277513 3256367 ~ 3258850 (+)
LOC111195173 NA other upstream 967069 2525683 ~ 2569294 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other upstream 1075691 2457564 ~ 2460672 (+)
G181818 NA other upstream 3144233 391614 ~ 392130 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other downstream 819392 4369917 ~ 4431946 (+)
LOC103029349 NA other downstream 1385058 4935583 ~ 4941134 (+)
G182790 NA other downstream 1876342 5426867 ~ 5427255 (+)
G183001 pgm2 other downstream 2492163 6042688 ~ 6048474 (+)
pax5 pax5 other downstream 2700249 6250774 ~ 6367190 (+)

Expression


Co-expression Network