lrrtm1 (lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618)


Basic Information

Item Value
gene id lrrtm1
gene name lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 1148098 ~ 1153043 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234577.3
cgagtgagagagcgagCTGGGCTGAATTGTGAGTGGCGTACGACACTCAGTGAACAGAAGGTGTTTCTGCATGCACTGGCAGCGCACTAGTCTGCTGCAAGGGCTCTCTagctctattctctctcttttttctccctctctttctctctctctctctccatctccctctgactctctctctctctcctccacacGCACCAGCCCTGCCTTTCAGCCTCTATGCCTCAGCTTCTCCGCTCGGCAACAGCCTCCTCAGCCCACAGGAAATGAGCGGCAGCCAAAAGAGAGCTCGCTGGAAAGCAGGCTTCTAACGGACACGGCACTTCGGGATACCGAAAAAAAGACGAGAAAAGAAcgataaaaagaaaagaggcaAGAGGGGTGCAGCCAGGGTGGCAAGTATTCATCTCACACAAATGAGGGCACGTTTCTGAGGAAGCTTTCCTCCGAGAGATCGACGGCCAGCAAAACTGGATATAAACCGCGCAGGTCAACGGCTGCTTAAACCGACGGACGTTAATTTGCGTCGGCAGTTCCAAGAGAGTCTCCGGCAAAAAAGACTAAGAGAgagtggggggaaaaaagaaggAGTTTGAGTGGATTTTCCCCCTtcgtgagtttttttttttttttttccctctctctcgcgcttCTCCTCCTGCTCTGATCAGCGCAGCAGTCACTGCGGAGAAGCAGTAGAGGGAAAACAGTGCTCACGCATGCAGTCTGGGCAGCTTGCATTTCCTGCGAGTGCGCTGAATGCCACTTGGATTCCTCCTCTTTCTGGCTCTTTTCACACGAGGAGAACTAAGACATTGTAAGTCTGCCAGGAGCTGGTGGCCGCTGAAAAGGAGGGGGGGCTGAATTTGTACCACACTGGGATCTTTTTTAGATTCGCACATAATTAGTGGCGGCACAAAGGGAGCAGCTGAATAGAGGTTGTCAGCCTCTGGAAGGGGTGAGTAGGAATCCTTTCATACGAGATTGATTCTTgaagaaagcttttttttttttttaccaccctTGTCTCTCCTTTTGCTGCTCAAAATCTAACATGAGCAAAGTGACTTGCCGTTTCCCCCTTTTGACGTGGTTGGATTTTCTTATTTGCCTTTGAGTAACAAAATCACAAATCACCATCAGCCAAGCCAcgcttaaaacaaacaaaaaacatgaacaGAACTGAGTATTTTTGACCTGGGGAGTTACAAAATCATGGCGTCCACAACGAGAGGAATCTGAATGATTCAATGAACTTTTTCTCCACGACACTGCGGGATATTCATGCTAATGGATTTCCTCCTAATTGGCCTGTACTTAAAGTGGCCGCTAAGGAAGCCCCCTGGGTTGATACTGTGCTCTCTGGGCATCTTTCTGAAAATGGTTCCCCTGGTGGGGGCGAGCTGTCCGAGGCTGTGCCGCTGCGACAGCAAGCTGCTGTATTGCGAGGGGCTCAACCTAACGGACATCCCCCGCAATCTGAGCAGCGCCACAGGCTTATCCCTGCGGGAGAACAACATCTCAGAACTGCGCGAGGGGCACTTCGTTGGCCTGTCGCAGCTCACCTGGCTCTACCTGGATCATAACAACATCGAGTTTGTCGAGGAGAGCGCCTTCGAGAGGCTGCGACGGGTCAAGGAACTCGACCTCAGCACCAACCGGATAGAGACCCTGTCCAATGGGACTTTCAGGCCATTGCCTAACCTGCGCATCTTGGATTTATCCTATAACAGGCTGCAGTCACTGGAGCCAGACCTTTTCCACGGCCTTAGGAAGCTTACCAATTTGCACTTGCGCTACAACGCCCTGAAGTTTGTGCCTGTGAGGATCTTCCAGGACTGCAGGAGCATGCAGTTCCTGGATTTGGGCTACAACCAGCTGCAGAGCCTGGCACGTAACTCATTTGCTGGGCTCTTCAAACTGACTGAGCTGCATCTGGAGCACAACGAGCTGGTCAAAGTCAACCTGGCCCACTTTCCCCGCCTCATTGCCCTGCGCACACTCTACATGCGCAACAACAAGGCCAACATTGTGGTCAACACCCTGGACTGGACCTGGCACTTCCTGGAGAAGATTGACTTCTCCAACAACGAAATCGAGAACATTGAGCCACATGTCTTTGAAAGTGTGCCCAACCTCAAAGAGCTCATGCTGGACTCAAATAAGCTAACCTATGTGGATCAGCGCATCTTGGACTCTTGGACATCCCTAGGCAGCATTACCTTGTCTGGGAATCAATGGGAGTGTAGCCGCAATGTGTGCGCCCTGGCCTCCTGGCTGAGTGGCTTCCAGGGCCAACGTGATAGCACCTTGCAGTGTTCAAGCCCTGACACAGCCCAAGGAGAGGACATTCTGGACGCTGTCTACGCTTTCCAGCTGTGTGAGGACAGCGCTGAGGCCACCACACAGACCTACGCAGCCACTAGAGATCTGGCTCGAGGCTCCATTTTTAAAGGCCCCACCAGAGGCCCGTACGATCTACAAGACGTGGAGGGTGGGGAGGTGGTCACCAACTCCTTTACAGTAACCATGGCTGCAGATGATTTGGAGAGTACCATGCAGATCCACAAAGTTGTGACAGGCACCATGGCACTCATCTTTTCCTTTCTTATTGTTGTGCTCATGCTCTACGTGTCGTGGAAGTGCTTCCCGGCCGGTGTGAGGCAAGTGAGGCAATGCTTCACCAGCCAACGCCgcaagcagaagcagaagcagaccATGCAGCAGATGGCCACCTTGTCCACACCCGAGTACTACGTGGACTACAAGCCCAACCACATCGAAGGCGCTCTCGTCATCATCAACGAATATGGCTCCTGCACCTGCCAGCAACAGGCATCCCGGGAATGTGAGGTGTGAAGACTTGGCTGCCGTCCCTGGATATTTCACAATTGCACCAGATCAATGGATATGGGACATGCTTTGATGCTGTACCACACTGTGCTGCTCTCTGGAAGAGACTTGGATGGCATGTTCGGAGTGCTAGGGGACAGAGACCGAGGATTTACAGCTGATTTCAATGGACTCTTTCAATGAACCAGGCTTTGGGACTGCTTGACACATTGTCATGGAGCTGGCAGGAATATTGTATGGGAACTCATCGGTCAAGTTATCTTGTGACGAGTGGATATTTGAGCTTTAATGTGTCTTTCTACTGAAGGAGATTAACTGTCTAAAGCTACTGAGGACTTCAAGAACACAATTTTTCATTGTGGTAACGACATTAACAATGacaaaaatcaaaaaaaaaaaagggaaaaaagagatgagtgtgtaaaatatgtttaaatcagAAATGAATAAGTGGGAATAAAAATTAAGATGCTATCATATTTCTTTTGTAAACTatggaaaaaaggaaacaaatgtttaaataaatgaattgcaATTCACAATAGACACGTCTGCAGGCGAGTTTCAGGGGTGGTTTGTTGTCAGTGGTAGCTGGGGAGGAATTGTCAGTTTGGCTCTGCGGTATTTGCAGGTGGTAAATAAAACGTGCAATGGGGATCTCGTCGTCACTTCATTTGAAATGTTAAGCCTCAATCTGAAATTCAGATCTTTTGGCCCTCCACCACCCTACCCcaccctttctctttcttccccATCTCACCATATGTGGGGAATAATCACTGTGCAGGCTTGCTGTTACTGTTGTGGTTGCTTTTTATCTTCTCGTGTCCTTTTCCTCATAGATTAAGCAAgccaaaaagagagaaaaaaaaaggagccTGTAGGGTTCTAACCTTAACGGATCATTTTACACAATTGAACCATGTGGTCCTGCGCAGTCTCAATAAAACAGGGCCATGGCGTTTTAATGGCTCAAAGCTTTTCAATGCCTTTTGATTGCTTTCTCATGCTCAGCTAGTGTGCTAGACCTTCCTAAGACAGTGGTGAAATCAGAGCTGGAACAACAGGCACATACAGATAGCCTAGCCTTAACCATTCATGTTCAGAATCGTTCAGAATGGGTTTAGAACTTGTAGGGATTGTTAAGGGTTGATAAAAAGATGATGATTTGTTTTGTCCCTCAATTTCTGATTAAGAAGCTATTTTTTCAAGATTTCCTTTTTTCGTTAAGGTGTTTGTTAAGGGGCATACTGGCAGGCAGTGTGTCCTGTGGCACTGGCAGGAAGACAGAGGAAAGGATGTGGGTTCTGAAAGAAGGTGCAGACTGCTCTCTAGTGTCCCAACACATGCGGTAGAGGGAAGGAAGATATGGTAGCAGCAAGCCAGTGCCTTGCCTTTCCTTAGGTACAGTAGGCTTTAGGTGATGgttttagattttgttttattgttttttgtacctgggaacatatatatatacacatttgtatgtgtgtgtatgaaagcATTTGcttatatgtctgtctgtctgtgtgtgtgtgtgtgtcggtcctaGCTTAGCACTGGACACAGTCACTGCTGCAGAGTAAGTAAGGCATCATGCATTCTGAACACACAGGCCGGTCACTAGGAGTAAACAAGGGTTCAATTACTTTAAAACGAACGACTCCTCCAGTGCTTTCAGCTGTCACTCAACTTAAGGCATTTTGCGGCTACCAGCAGCTAGCGAAGGGGCAAGCTGGGGAATGTCACTATTAGACATGCTTGAGCGTGTATTCCTGGTTACTTGagcatatatgtatgtatacgtATGTGGGTCAAGCTTGAGCTCTTTTGGATTGGTTTCTTTTATCGAAAGTTTAACTGCATGTGTGGCTTTTGGAAGACCAACACTATTTTTTtgtcaagtgtgtgtgtgtgtgaatgtgtgtgggaTGTCACAAAACAAGGAAAACTGTGAAGCTAAGCAGGGATTTTCATATATGTCAACCTCAATGGCCCTGACGACCCTTGAAACTTGATCTCGAACTGTTCTATTTTCACCACTGTATCTGATCCATTTGACGAGCTGAGCCAAAATAAACGAATAAAACGCA

Function

symbol description
lrrtm1 Enables identical protein binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including anterior neural keel; anterior neural rod; basal plate midbrain region; immature eye; and nervous system. Orthologous to human LRRTM1 (leucine rich repeat transmembrane neuronal 1).

NR:

description
PREDICTED: leucine-rich repeat transmembrane neuronal protein 1

GO:

id name namespace
GO:0042802 identical protein binding molecular_function

KEGG:

id description
K16665 LRRTM1_2; leucine-rich repeat transmembrane neuronal protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234577.3 True 4946 mRNA 0.48 1 1148098 1153043

Neighbor

gene id symbol gene type direction distance location
suclg1 suclg1 coding upstream 607964 509651 ~ 540134 (+)
LOC103047018 LOC108434388 coding upstream 652676 475671 ~ 495422 (+)
bdh2 bdh2,LOC107746975 coding upstream 672744 463323 ~ 475354 (+)
tacr3 tacr3a,tacr3,LOC108411976,LOC107552719,LOC107746781,LOC107674253,LOC107556806 coding upstream 721584 378228 ~ 426514 (+)
LOC103042564 si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780 coding upstream 806656 332130 ~ 341442 (+)
LOC103025599 NA coding downstream 238368 1391411 ~ 1412738 (+)
uchl1 uchl1,LOC107548360,LOC107709457 coding downstream 288407 1441450 ~ 1446518 (+)
LOC103024236 NA coding downstream 294659 1447702 ~ 1517348 (+)
exosc9 exosc9,LOC107656918,LOC107702358,LOC107746036,LOC107591532 coding downstream 365636 1518679 ~ 1527400 (+)
LOC103023290 ptpn9b,LOC108434348,LOC107746013,LOC107702357,LOC107591531,LOC107754144,LOC107551593 coding downstream 376073 1529116 ~ 1544361 (+)
LOC103046702 NA non-coding upstream 154129 915259 ~ 993969 (+)
G181955 NA non-coding upstream 223920 918330 ~ 924178 (+)
LOC111195161 NA non-coding upstream 408632 725081 ~ 739466 (+)
G181934 NA non-coding upstream 471891 675919 ~ 676207 (+)
G181927 NA non-coding upstream 484579 629907 ~ 663519 (+)
G181982 NA non-coding downstream 222154 1375197 ~ 1378219 (+)
LOC111195170 NA non-coding downstream 394158 1547201 ~ 1554782 (+)
G182006 NA non-coding downstream 402558 1555601 ~ 1555846 (+)
G182012 NA non-coding downstream 436911 1589954 ~ 1592276 (+)
G182016 LOC108441695 non-coding downstream 442734 1595777 ~ 1596627 (+)
G181818 NA other upstream 755968 391614 ~ 392130 (+)
LOC111195149 NA other upstream 757932 289010 ~ 390166 (+)
LOC111195150 NA other upstream 841786 300095 ~ 306312 (+)
G181801 NA other upstream 861817 282076 ~ 286281 (+)
G181799 NA other upstream 869925 276671 ~ 278173 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other downstream 1304521 2457564 ~ 2460672 (+)
LOC111195173 NA other downstream 1372640 2525683 ~ 2569294 (+)
G182356 NA other downstream 2103324 3256367 ~ 3258850 (+)
G182361 NA other downstream 2134895 3287938 ~ 3290258 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other downstream 3216874 4369917 ~ 4431946 (+)

Expression


Co-expression Network