LOC103036626 (LOC108414886,LOC108414926,LOC108414927)


Basic Information

Item Value
gene id LOC103036626
gene name LOC108414886,LOC108414926,LOC108414927
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4498037 ~ 4506712 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238222.3
GGGACATTTCTGGAGATCATTCTTCAGATGGTTTCTGCTAAATGTTGTCCACCCACCACACTGACCACAGCAGAAGCACTGCAGATGCTGTAATAAACTGATGGGCTTTGCTaccaaagaataaaaagaatttGCCACATACAGCAGGACCTCATACACGATGATGAACTGGATTCTTTTGCTTGGGATGTTTTCCTGCCTGGAACTCTCTCACTGTGACAGAGACGCGAGTTATTTCAGTCCCCGGAGCTGCAAAGAACtcatggaaaaatataaaaccaatgAAGATGGCCTGTACTACCTGACTACTGCAAGTGGGGTGGCCTACCAGACCTACTGTGATATGACCACTGATGGAGGCGGCTGGACGCTGGTGGCCAGTGTGCACGAGAACAACATGTATGGGAAGTGCACTGTAGGTGACCGCTGGTCCAGCCAGCAAGGTAGTGACATTAATAACCCTGAAGGAGACGGAAACTGGGCTAACCTGGCTATATTTGGAACTGCAGAAGGTGCTACTAGCGACGACTACAAGAATCCTGGGTATTATGACATCGAAGCTCAGGACGTGTCTGTATGGCATGTTCCCAATAATGCCGAGACGCAGCAATGGAGATCCAATTCCATCTTACGCTACCACACCGAAAATCACTTCCTCGATGACAATGGAGGAAACCTCTATAACTTATTCAAGAAATATCCAGTGAAGTATGGAATTGGAGTTTGCCGTACTAATAACGGACCTACTGCCCCGGTGGTGTACGATTTCGGAAATAAAGATATTACCAAGAACCTTTATGGTCCGAATCCGAGGGGAGAGTCAGAGCCTGGATTTATCGCTTTCCGAGTGTTTAACAACGAGAAGGCAGCCATGGCCATCTGCTCTGGAGTCAGACCAACGGGCTGCAATACAGAACATTACTGTATTGGGGGAGGAGGGCATTTCCCAGAAGCGGCACCTAAACAGTGTGGAGATTTTGCCGGTTTTGACTGGAACGGCTACGGGACAAATGCAGATTGGAGTGCCTCCAAAACGATCACTGAGGCTGCTGTGTTTCTATTTTACCGCTGAAATTCAGAGCACACACTCACCTCTATCACTGTTTATCTTTCTTTATAATTCATTTAACCGAATATACAGTAAGATCATTTCTAAATAAGAAACAGTAACTCTTACACTGATTATACCGACAATcctctccaaaagtattggaacagtgaggacAATCTCTTTAATTATACTGTAGACCGACAACATTTGGGTTTTCATGATAAAACAATGAATATGAGATTAAAAAGTATTAGAACACTTTCAGCTGGTTAATGTTTTGGGGGGTAAAATGCATGCTTTATAGGGTTTAAGTCTGGAGATGGACTAGGCCAGTCTAAAACCGTCCACTTCCacttacttagtacaccagtgacgactttcttctttcttcagaACATTCCAAACGATTGTACTGactatggacaatatttgtgcaatgTCTCCGATTGCTTTTTAGAATTTACTCTACAGGTTCTTTAGCCGTTGACagttctctgtttttttatgttggttgCTGTCTTTTATAAATACctgttaataaacaaaaaacaaacaaaaaaa

Function

NR:

description
PREDICTED: intelectin-like

GO: NA

KEGG:

id description
K17527 ITLN; intelectin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238222.3 True 1612 mRNA 0.43 8 4498037 4506712

Neighbor

gene id symbol gene type direction distance location
LOC103036009 NA coding upstream 18288 4474733 ~ 4479749 (+)
sclt1 sclt1 coding upstream 74999 4395815 ~ 4423038 (+)
pcdh18 LOC108413018 coding upstream 670272 3815403 ~ 3827765 (+)
LOC103037959 NA coding upstream 947512 3536363 ~ 3550525 (+)
LOC103037633 NA coding upstream 962985 3524196 ~ 3535052 (+)
LOC103029042 chic2,LOC103029042,LOC108441324,LOC103353160,LOC101486940,LOC106602128 coding downstream 435709 4942421 ~ 4948100 (+)
LOC103030219 tsn5,tspan5b,LOC108441323,LOC107557938,LOC107692617,LOC107758863,LOC105893813,LOC103360687 coding downstream 464392 4971104 ~ 4981396 (+)
LOC103028516 slc24a2,LOC103028516,LOC108441320,LOC108260852,LOC107665969 coding downstream 489065 4995777 ~ 5031681 (+)
LOC103028729 LOC108415759 coding downstream 573686 5080398 ~ 5105339 (+)
mttp mttp,mtp,zgc:136353 coding downstream 609805 5116517 ~ 5140276 (+)
G182600 hgsnat,LOC108411545 non-coding upstream 45005 4448681 ~ 4453032 (+)
G182597 hgsnat,LOC108411545,LOC107656620,LOC107565475 non-coding upstream 55390 4437984 ~ 4442647 (+)
G182591 NA non-coding upstream 60869 4436553 ~ 4437168 (+)
G182592 NA non-coding upstream 105659 4376381 ~ 4392378 (+)
G182566 NA non-coding upstream 339235 4158360 ~ 4158802 (+)
G182606 NA non-coding downstream 7041 4513753 ~ 4514215 (+)
G182607 NA non-coding downstream 7575 4514287 ~ 4514859 (+)
G182673 NA non-coding downstream 343875 4850587 ~ 4851443 (+)
G182674 NA non-coding downstream 344791 4851503 ~ 4852061 (+)
G182690 NA non-coding downstream 379024 4885736 ~ 4889343 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other upstream 66091 4369917 ~ 4431946 (+)
G182361 NA other upstream 1207779 3287938 ~ 3290258 (+)
G182356 NA other upstream 1239187 3256367 ~ 3258850 (+)
LOC111195173 NA other upstream 1928743 2525683 ~ 2569294 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other upstream 2037365 2457564 ~ 2460672 (+)
LOC103029349 NA other downstream 428871 4935583 ~ 4941134 (+)
G182790 NA other downstream 920155 5426867 ~ 5427255 (+)
G183001 pgm2 other downstream 1535976 6042688 ~ 6048474 (+)
pax5 pax5 other downstream 1744062 6250774 ~ 6367190 (+)
rnf38 rnf38,LOC107551561 other downstream 1938551 6445263 ~ 6498192 (+)

Expression


Co-expression Network