LOC103029042 (chic2,LOC103029042,LOC108441324,LOC103353160,LOC101486940,LOC106602128)



Basic Information


Item Value
gene id LOC103029042
gene name chic2,LOC103029042,LOC108441324,LOC103353160,LOC101486940,LOC106602128
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4942421 ~ 4948100 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007239677.2
GAAGTCTCGCGATAAGCGGCGGGATCTGAGGCGGATGTTGATGTTGTTGTGGCTGGGCtcgcggcggcggcggcggtgaTAATAATAAGAGCGATACCGGAGGAGTTTTAGGCTGATTTTAGTTAATAAAGCGGCGGGAGGAGGCGGTGAGCGGGCTCTGGAGCTCCCCCGGCCCCCGATCTCCGCTCCCCCGGGGCCGAGGCGGCGATGATGGAGGACTTTGATGAGATCTacgaggaggaggaagaagaagaggaggaagaggaggaggacgagcAGCGGGCCGCGGAGGAGCAGCTTCTCAAATACGCCCCGGAGCCGGTCCTGGTCCGGGGATCGGGCCGGGTCACCGTGTTTGGACTCAGCAATAAATTTGAGTCAGAATTTCCTTCAGCACTTACGGGAAAGGTAGCACCTGAGGAGTTCAAAGCCAGCATAAACCGAGTGAACGGCTGCCTGCGGAAGACGTTGCCGGTGAACGTGCGGTGGTTGCTGTGCGGCTGTCTATGCTGCTGCTGTACCCTGGGCTTCAGCCTGTGGCCGGTTATCTGCCTCAGCAAACGGACACGAAGATCCATAGAGAAGTTACTGGAGTGGGAGAACAGTCGGCTCTATcacaagCTGTGTTTGCATTGGAGGCTGAGCAAAAGGAAGTGTGAAACCAACAACATGATGGAATATgtaattCTAATAGAGTTTCTACCCAAGATCCCCATCTTCAGACCGGATTAGCAGCTGTAACCGCTGTACTCTGCCTTATGGTGCCTTTCTCTGGTACTGTTGTGATCCCCCATGTGCCCCCTGCCCCCCCAGAACCTTGGACTACAAACTCTCGtccttatatatattatatatgctaCTTATCACAATCAGTGCTCTGTACTGTACCGAGCATTGTttacaactcacacacacttatacacacacttacacaacacATGGATGCGTGTGTgtcacacacatttacaaatgGATAAACTGTAACCCTGGCCTACAGGAAGCTGTAAGGTggacgcgcacacacacacacacttgtgcacacatattatatattttaaccccttaaccaATCAAAACGGGAAAAAAACTTCCTCTTACCCTTCAAGTTTAGACCTGCACCTTCATCCACACCGGTGAAACAGCCACGCGCTACAGTTGACGTCCTGTTTGAGCTACTGAGGAGCCAATCAAGCGGAGTTATTCCACAGCACAAGGCGCTGCTCGTcgtttctttactttttaaccCAAATGTAGCCCCGTCTGGTATGTCAAGTTTGCTTCTTAGGTGTTTCACTAAGGCAATGAGGctgatttagctttttttttatattaattttagaaTTCCTGTATAAATTAGGGTTTTGGTGTGAAAATGTGCTTCATTGTTCTGCCAATTCGATAAACATCATGATATATTGTGTTCCTGAAAGCAAGACGAttatattgtgattgtttaaaCGATTAGATTTTAGAAACAAATATAtgctatatttataaaatctgagtaaatcTAAGTTTACACAGTACCTCCCTCTAGTGGTCAgggtttaaaaacaacacaaaatgaacccaTGTCTGATGCCACTCTTAATCTACATGTAAaccatttaataattaattaattaaaaatcgaTACTGTTGAA

Function


symbol description
chic2 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human CHIC2 (cysteine rich hydrophobic domain 2).

NR:

description
cysteine-rich hydrophobic domain-containing protein 2

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007239677.2 True 1643 mRNA 0.47 6 4942421 4948100

Neighbor


gene id symbol gene type direction distance location
LOC103036626 LOC108414886,LOC108414926,LOC108414927 coding upstream 435709 4498037 ~ 4506712 (+)
LOC103036009 NA coding upstream 462672 4474733 ~ 4479749 (+)
sclt1 sclt1 coding upstream 519383 4395815 ~ 4423038 (+)
pcdh18 LOC108413018 coding upstream 1114656 3815403 ~ 3827765 (+)
LOC103037959 NA coding upstream 1391896 3536363 ~ 3550525 (+)
LOC103030219 tsn5,tspan5b,LOC108441323,LOC107557938,LOC107692617,LOC107758863,LOC105893813,LOC103360687 coding downstream 23004 4971104 ~ 4981396 (+)
LOC103028516 slc24a2,LOC103028516,LOC108441320,LOC108260852,LOC107665969 coding downstream 47677 4995777 ~ 5031681 (+)
LOC103028729 LOC108415759 coding downstream 132298 5080398 ~ 5105339 (+)
mttp mttp,mtp,zgc:136353 coding downstream 168417 5116517 ~ 5140276 (+)
trnai-aau_13 NA coding downstream 227736 5175836 ~ 5175908 (+)
G182690 NA non-coding upstream 53078 4885736 ~ 4889343 (+)
G182674 NA non-coding upstream 90360 4851503 ~ 4852061 (+)
G182673 NA non-coding upstream 90978 4850587 ~ 4851443 (+)
G182607 NA non-coding upstream 427562 4514287 ~ 4514859 (+)
G182606 NA non-coding upstream 428206 4513753 ~ 4514215 (+)
G182703 NA non-coding downstream 18911 4967011 ~ 4969678 (+)
G182730 NA non-coding downstream 88110 5036210 ~ 5037608 (+)
G182752 NA non-coding downstream 334248 5282348 ~ 5339331 (+)
G182791 NA non-coding downstream 479249 5427349 ~ 5427850 (+)
G182907 NA non-coding downstream 545742 5493842 ~ 5498366 (+)
LOC103029349 NA other upstream 1287 4935583 ~ 4941134 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other upstream 510475 4369917 ~ 4431946 (+)
G182361 NA other upstream 1652163 3287938 ~ 3290258 (+)
G182356 NA other upstream 1683571 3256367 ~ 3258850 (+)
LOC111195173 NA other upstream 2373127 2525683 ~ 2569294 (+)
G182790 NA other downstream 478767 5426867 ~ 5427255 (+)
G183001 pgm2 other downstream 1094588 6042688 ~ 6048474 (+)
pax5 pax5 other downstream 1302674 6250774 ~ 6367190 (+)
rnf38 rnf38,LOC107551561 other downstream 1497163 6445263 ~ 6498192 (+)
LOC103036850 NA other downstream 1575113 6523213 ~ 6664763 (+)

Expression



Co-expression Network