LOC103029042 (chic2,LOC103029042,LOC108441324,LOC103353160,LOC101486940,LOC106602128)
Chromosome Information
Item |
Value |
chromosome id |
NC_035917.1 |
NCBI id |
CM008320.1
|
chromosome length |
21661149 |
location |
4942421 ~ 4948100 (+) |
genome version |
Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
Sequence
>XM_007239677.2
GAAGTCTCGCGATAAGCGGCGGGATCTGAGGCGGATGTTGATGTTGTTGTGGCTGGGCtcgcggcggcggcggcggtgaTAATAATAAGAGCGATACCGGAGGAGTTTTAGGCTGATTTTAGTTAATAAAGCGGCGGGAGGAGGCGGTGAGCGGGCTCTGGAGCTCCCCCGGCCCCCGATCTCCGCTCCCCCGGGGCCGAGGCGGCGATGATGGAGGACTTTGATGAGATCTacgaggaggaggaagaagaagaggaggaagaggaggaggacgagcAGCGGGCCGCGGAGGAGCAGCTTCTCAAATACGCCCCGGAGCCGGTCCTGGTCCGGGGATCGGGCCGGGTCACCGTGTTTGGACTCAGCAATAAATTTGAGTCAGAATTTCCTTCAGCACTTACGGGAAAGGTAGCACCTGAGGAGTTCAAAGCCAGCATAAACCGAGTGAACGGCTGCCTGCGGAAGACGTTGCCGGTGAACGTGCGGTGGTTGCTGTGCGGCTGTCTATGCTGCTGCTGTACCCTGGGCTTCAGCCTGTGGCCGGTTATCTGCCTCAGCAAACGGACACGAAGATCCATAGAGAAGTTACTGGAGTGGGAGAACAGTCGGCTCTATcacaagCTGTGTTTGCATTGGAGGCTGAGCAAAAGGAAGTGTGAAACCAACAACATGATGGAATATgtaattCTAATAGAGTTTCTACCCAAGATCCCCATCTTCAGACCGGATTAGCAGCTGTAACCGCTGTACTCTGCCTTATGGTGCCTTTCTCTGGTACTGTTGTGATCCCCCATGTGCCCCCTGCCCCCCCAGAACCTTGGACTACAAACTCTCGtccttatatatattatatatgctaCTTATCACAATCAGTGCTCTGTACTGTACCGAGCATTGTttacaactcacacacacttatacacacacttacacaacacATGGATGCGTGTGTgtcacacacatttacaaatgGATAAACTGTAACCCTGGCCTACAGGAAGCTGTAAGGTggacgcgcacacacacacacacttgtgcacacatattatatattttaaccccttaaccaATCAAAACGGGAAAAAAACTTCCTCTTACCCTTCAAGTTTAGACCTGCACCTTCATCCACACCGGTGAAACAGCCACGCGCTACAGTTGACGTCCTGTTTGAGCTACTGAGGAGCCAATCAAGCGGAGTTATTCCACAGCACAAGGCGCTGCTCGTcgtttctttactttttaaccCAAATGTAGCCCCGTCTGGTATGTCAAGTTTGCTTCTTAGGTGTTTCACTAAGGCAATGAGGctgatttagctttttttttatattaattttagaaTTCCTGTATAAATTAGGGTTTTGGTGTGAAAATGTGCTTCATTGTTCTGCCAATTCGATAAACATCATGATATATTGTGTTCCTGAAAGCAAGACGAttatattgtgattgtttaaaCGATTAGATTTTAGAAACAAATATAtgctatatttataaaatctgagtaaatcTAAGTTTACACAGTACCTCCCTCTAGTGGTCAgggtttaaaaacaacacaaaatgaacccaTGTCTGATGCCACTCTTAATCTACATGTAAaccatttaataattaattaattaaaaatcgaTACTGTTGAA
Function
symbol |
description |
chic2
|
Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human CHIC2 (cysteine rich hydrophobic domain 2).
|
NR:
description |
cysteine-rich hydrophobic domain-containing protein 2 |
GO: NA
KEGG: NA
RNA
RNA id |
representative |
length |
rna type |
GC content |
exon number |
start site |
end site |
XM_007239677.2 |
True |
1643 |
mRNA |
0.47 |
6 |
4942421 |
4948100 |
Neighbor
gene id |
symbol |
gene type |
direction |
distance |
location |
LOC103036626 |
LOC108414886,LOC108414926,LOC108414927
|
coding |
upstream |
435709 |
4498037 ~ 4506712 (+) |
LOC103036009 |
NA
|
coding |
upstream |
462672 |
4474733 ~ 4479749 (+) |
sclt1 |
sclt1
|
coding |
upstream |
519383 |
4395815 ~ 4423038 (+) |
pcdh18 |
LOC108413018
|
coding |
upstream |
1114656 |
3815403 ~ 3827765 (+) |
LOC103037959 |
NA
|
coding |
upstream |
1391896 |
3536363 ~ 3550525 (+) |
LOC103030219 |
tsn5,tspan5b,LOC108441323,LOC107557938,LOC107692617,LOC107758863,LOC105893813,LOC103360687
|
coding |
downstream |
23004 |
4971104 ~ 4981396 (+) |
LOC103028516 |
slc24a2,LOC103028516,LOC108441320,LOC108260852,LOC107665969
|
coding |
downstream |
47677 |
4995777 ~ 5031681 (+) |
LOC103028729 |
LOC108415759
|
coding |
downstream |
132298 |
5080398 ~ 5105339 (+) |
mttp |
mttp,mtp,zgc:136353
|
coding |
downstream |
168417 |
5116517 ~ 5140276 (+) |
trnai-aau_13 |
NA
|
coding |
downstream |
227736 |
5175836 ~ 5175908 (+) |
G182690 |
NA
|
non-coding |
upstream |
53078 |
4885736 ~ 4889343 (+) |
G182674 |
NA
|
non-coding |
upstream |
90360 |
4851503 ~ 4852061 (+) |
G182673 |
NA
|
non-coding |
upstream |
90978 |
4850587 ~ 4851443 (+) |
G182607 |
NA
|
non-coding |
upstream |
427562 |
4514287 ~ 4514859 (+) |
G182606 |
NA
|
non-coding |
upstream |
428206 |
4513753 ~ 4514215 (+) |
G182703 |
NA
|
non-coding |
downstream |
18911 |
4967011 ~ 4969678 (+) |
G182730 |
NA
|
non-coding |
downstream |
88110 |
5036210 ~ 5037608 (+) |
G182752 |
NA
|
non-coding |
downstream |
334248 |
5282348 ~ 5339331 (+) |
G182791 |
NA
|
non-coding |
downstream |
479249 |
5427349 ~ 5427850 (+) |
G182907 |
NA
|
non-coding |
downstream |
545742 |
5493842 ~ 5498366 (+) |
LOC103029349 |
NA
|
other |
upstream |
1287 |
4935583 ~ 4941134 (+) |
G182577 |
pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613
|
other |
upstream |
510475 |
4369917 ~ 4431946 (+) |
G182361 |
NA
|
other |
upstream |
1652163 |
3287938 ~ 3290258 (+) |
G182356 |
NA
|
other |
upstream |
1683571 |
3256367 ~ 3258850 (+) |
LOC111195173 |
NA
|
other |
upstream |
2373127 |
2525683 ~ 2569294 (+) |
G182790 |
NA
|
other |
downstream |
478767 |
5426867 ~ 5427255 (+) |
G183001 |
pgm2
|
other |
downstream |
1094588 |
6042688 ~ 6048474 (+) |
pax5 |
pax5
|
other |
downstream |
1302674 |
6250774 ~ 6367190 (+) |
rnf38 |
rnf38,LOC107551561
|
other |
downstream |
1497163 |
6445263 ~ 6498192 (+) |
LOC103036850 |
NA
|
other |
downstream |
1575113 |
6523213 ~ 6664763 (+) |
Expression