LOC103032759


Basic Information

Item Value
gene id LOC103032759
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 325636 ~ 329837 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604221.2
GAAGTTCTTGACTATATATATTGCATCTGTGTGGAGCAATCAGGTACTCTGCTCCTCCAAGAGACTCTACACAGACGCATCACTGTATAACTGCAGAAGACGGTCAAGATGAAAGCTGTGGCAATCTTCTTGTGTTTTGTGGCCTACACATTCGCTGCCCCAGCGCCCGACAGCGGCAGCCAGGAGCAGCAGATAGCTGCCCATGCTAACACAGCCCTGCATCTGATGGAACTCTACAGGATGTATGGCCACCTGCAGCAACAGGGTGTCGCAGctcctgctccagctccagttcAGCCCTTCCTGTTTAACTACCCAACCCTGCCCAGAGGAGGAGATAACTCTGATGAGGAAGCACAGCCTAATTACGCTGCATTTTACCCTCCCCACGGCTTCCCAGCTGTACCAGCAGCACCGGCGGCACCAGCAGCCCCACTGAACTCCGATGAAGCCGAGGGAGCAGAAGAGGCCGAGGCCGTAGAATCAGAACCAGCAGCTGAAGCCGAACCGGCAGCCGAAGCCGAACCTGCAGCTGAAGCGGTCCCAGCAGCCGAAGCGGTCCCAGCAGTCGACCCTGCAGTCGACTTAGCAGTCGACCCATTAGTCCCTGTTGCCACTCCCATCGACCCCGCTGTCATTGACCCCCATGTGGCTGTTGAAGTAGGCATTGAGGTTCCTGCCTCCGCAAACATCCCTGCCGCCGATGTCCTCGCAGCTGCCACTGCCATAGCTGCCGACCCGGCCCTTGTCCCCCAGGGGGCGCCGGTGGCTATTGAGATCGACACCACAGTGGTGGGGCCAGAGGTTGGCGCTCCAATCGTTGCGGACTCTCCTGTCCAACCGTTTTAATCACCACCGCCCCATCCCACCCCGCCCACCCCAACAACTATCTATAAGATTAATCAGCCACATCACTACTGTAGAGGATTcacagttagcagcatagcTCAGGAGGTGGGCGGGGTTACAGTTTACATCCAGTCTATGTGCGCGAAAGGTTGATTTGTGTGAACCTCAGTGTGAAAATTGAAGCTCTGGGAGTGTGAGGAAACCTCATGTATGATTCAGtcttttctctgtatttttgtcTACGCTTGTTTTTCTTCAAATTAAACATGTCTGTCTTCATCCTGCAA
>XM_022681626.1
AAGTTCTTGACTATATATATTGCATCTGTGTGGAGCAATCAGGTACTCTGCTCCTCCAAGAGACTCTACACAGACGCATCACTGTATAACTGCAGAAGACGGTCAAGATGAAAGCTGTGGCAATCTTCTTGTGTTTTGTGGCCTACACATTCGCTGCCCCAGCGCCCGACAGCGGCAGCCAGGAGCAGCAGATAGCTGCCCATGCTAACACAGCCCTGCATCTGATGGAACTCTACAGGATGTATGGCCACCTGCAGCAACAGGGTGTCGCAGctcctgctccagctccagttcAGGCACAGGCTCAGTCTGTTCAACCTCAGCAACCCTTCCTGTTTAACTACCCAACCCTGCCCAGAGGAGGAGATAACTCTGATGAGGAAGCACAGCCTAATTACGCTGCATTTTACCCTCCCCACGGCTTCCCAGCTGTACCAGCAGCACCGGCGGCACCAGCAGCCCCACTGAACTCCGATGAAGCCGAGGGAGCAGAAGAGGCCGAGGCCGTAGAATCAGAACCAGCAGCTGAAGCCGAACCGGCAGCCGAAGCCGAACCTGCAGCTGAAGCGGTCCCAGCAGCCGAAGCGGTCCCAGCAGTCGACCCTGCAGTCGACTTAGCAGTCGACCCATTAGTCCCTGTTGCCACTCCCATCGACCCCGCTGTCATTGACCCCCATGTGGCTGTTGAAGTAGGCATTGAGGTTCCTGCCTCCGCAAACATCCCTGCCGCCGATGTCCTCGCAGCTGCCACTGCCATAGCTGCCGACCCGGCCCTTGTCCCCCAGGGGGCGCCGGTGGCTATTGAGATCGACACCACAGTGGTGGGGCCAGAGGTTGGCGCTCCAATCGTTGCGGACTCTCCTGTCCAACCGTTTTAATCACCACCGCCCCATCCCACCCCGCCCACCCCAACAACTATCTATAAGATTAATCAGCCACATCACTACTGTAGAGGATTcacagttagcagcatagcTCAGGAGGTGGGCGGGGTTACAGTTTACATCCAGTCTATGTGCGCGAAAGGTTGATTTGTGTGAACCTCAGTGTGAAAATTGAAGCTCTGGGAGTGTGAGGAAACCTCATGTATGATTCAGtcttttctctgtatttttgtcTACGCTTGTTTTTCTTCAAATTAAACATGTCTGTCTTCATCCTGCAA
>XM_022681627.1
GAAGTTCTTGACTATATATATTGCATCTGTGTGGAGCAATCAGGTACTCTGCTCCTCCAAGAGACTCTACACAGACGCATCACTGTATAACTGCAGAAGACGGTCAAGATGAAAGCTGTGGCAATCTTCTTGTGTTTTGTGGCCTACACATTCGCTGCCCCAGCGCCCGACAGCGGCAGCCAGGAGCAGATAGCTGCCCATGCTAACACAGCCCTGCATCTGATGGAACTCTACAGGATGTATGGCCACCTGCAGCAACAGGGTGTCGCAGctcctgctccagctccagttcAGGCACAGGCTCAGTCTGTTCAACCTCAGCAACCCTTCCTGTTTAACTACCCAACCCTGCCCAGAGGAGGAGATAACTCTGATGAGGAAGCACAGCCTAATTACGCTGCATTTTACCCTCCCCACGGCTTCCCAGCTGTACCAGCAGCACCGGCGGCACCAGCAGCCCCACTGAACTCCGATGAAGCCGAGGGAGCAGAAGAGGCCGAGGCCGTAGAATCAGAACCAGCAGCTGAAGCCGAACCGGCAGCCGAAGCCGAACCTGCAGCTGAAGCGGTCCCAGCAGCCGAAGCGGTCCCAGCAGTCGACCCTGCAGTCGACTTAGCAGTCGACCCATTAGTCCCTGTTGCCACTCCCATCGACCCCGCTGTCATTGACCCCCATGTGGCTGTTGAAGTAGGCATTGAGGTTCCTGCCTCCGCAAACATCCCTGCCGCCGATGTCCTCGCAGCTGCCACTGCCATAGCTGCCGACCCGGCCCTTGTCCCCCAGGGGGCGCCGGTGGCTATTGAGATCGACACCACAGTGGTGGGGCCAGAGGTTGGCGCTCCAATCGTTGCGGACTCTCCTGTCCAACCGTTTTAATCACCACCGCCCCATCCCACCCCGCCCACCCCAAC

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:0004982 N-formyl peptide receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604221.2 False 1136 mRNA 0.55 7 325636 329837
XM_022681626.1 True 1165 mRNA 0.55 8 325637 329837
XM_022681627.1 False 911 mRNA 0.59 8 325636 329585

Neighbor

gene id symbol gene type direction distance location
LOC103032143 NA coding upstream 10513 307677 ~ 315123 (+)
LOC111195169 NA coding upstream 60856 258891 ~ 264780 (+)
LOC103031511 NA coding upstream 69453 250476 ~ 256183 (+)
LOC111195167 NA coding upstream 78316 245466 ~ 247320 (+)
LOC103027206 NA coding upstream 118622 202308 ~ 207014 (+)
LOC103042564 si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780 coding downstream 2293 332130 ~ 341442 (+)
tacr3 tacr3a,tacr3,LOC108411976,LOC107552719,LOC107746781,LOC107674253,LOC107556806 coding downstream 48391 378228 ~ 426514 (+)
bdh2 bdh2,LOC107746975 coding downstream 133486 463323 ~ 475354 (+)
LOC103047018 LOC108434388 coding downstream 145834 475671 ~ 495422 (+)
suclg1 suclg1 coding downstream 179814 509651 ~ 540134 (+)
G181802 NA non-coding upstream 42832 282369 ~ 282804 (+)
G181800 NA non-coding upstream 45846 279565 ~ 279790 (+)
G181798 NA non-coding upstream 51803 271554 ~ 273833 (+)
G181797 NA non-coding upstream 56379 268702 ~ 269257 (+)
G181782 rps6kb2,LOC108413157,LOC108260512,LOC103368287,LOC104930044,LOC101478146,LOC102204811 non-coding upstream 94575 211835 ~ 231061 (+)
G181811 NA non-coding downstream 2743 332580 ~ 333245 (+)
G181816 NA non-coding downstream 102702 432539 ~ 433567 (+)
G181820 NA non-coding downstream 115244 445081 ~ 445298 (+)
G181821 NA non-coding downstream 162761 492598 ~ 500981 (+)
G181927 NA non-coding downstream 300070 629907 ~ 663519 (+)
LOC111195150 NA other upstream 19324 300095 ~ 306312 (+)
G181801 NA other upstream 39355 282076 ~ 286281 (+)
G181799 NA other upstream 47463 276671 ~ 278173 (+)
G181779 cd027,LOC108413410 other upstream 125640 191957 ~ 199996 (+)
G181818 NA other downstream 61777 391614 ~ 392130 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other downstream 2127727 2457564 ~ 2460672 (+)
LOC111195173 NA other downstream 2195846 2525683 ~ 2569294 (+)
G182356 NA other downstream 2926530 3256367 ~ 3258850 (+)
G182361 NA other downstream 2958101 3287938 ~ 3290258 (+)

Expression


Co-expression Network