LOC103033946 (tyrp1,tyrp-1,LOC108260967,LOC105903131)


Basic Information

Item Value
gene id LOC103033946
gene name tyrp1,tyrp-1,LOC108260967,LOC105903131
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 14200223 ~ 14207686 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681550.1
tctattttttctctctctcctctctctctctcagtcagaAGAAACATAATGAACCTGAGCCCGAATGAGAAGCGAGCCTTCGTGGATGCCCTGGACCAGGCCAAGCGCACCGTCCACCCTGACATCGTCATCGCCACCCGCCGCTACGCCGAGGCCTTCGGACCGGACGGAAACACCACGCAGTTTGAAGACATCACCATCTACAACTACTTTGTGTGGTCTCACTACTACTCAGTCAGCAAGACCTTCCTGGGGGGTGGAGAGCCCAGCTTTGGAGGGGTGGATTTCTCTCACGAGGGACCCGGGTTCGTGACCTGGCATCGCTTCCACCTCCTGCAGCTGGAACGAGACATGCAGGACATGCTGAGAGACCCCACTTTTGCACTGCCGTACTGGAACTTCGCTATTGGAGGCAGCGAGTGCGACATCTGCACCGACGACCTGATGGGAGCCCGCAGCAACTTCGACATGAACAGCATCAGTTCCAACTCCATCTTCGCTCAGTGGCGAGTGATCTGCGAAAGTGTAGAAGACTACGACACTCTGGGCACCATCTGCAACAGTACAGAGAGTACACCCATCAGGAGGAACCCAGCAGGGAACGTAGCTCGACCCATGGTCCAGAAGCTTCCAGAGCCTCAGGATATAGCAGCATGCCTGGAGGTGACCACATTCGACACCCCACCCTTCTACTCCACCTCGTCCCAGAGCTTCAGAAACACTGTTGAGGGTTACAGCGCCCCTGAGGGGACCTACGACCCTGTGGTGAGAAGTCTGCACAACCTGGCTCACCTGTTCCTCAACGGGACGGGCGGAACCACGCACCTGTCCCCCAACGACCCCATCTTCGTCCTGCTACACACCTTCACTGATGCCATCTTTGATGAGTGGCTCAGGAGACACCCAGAAGCTGCTGTATATCCTCTGGAGAACGCACCCATTGGCCATAACCGGGATTACAACATGGTGCCTTTCTGGCCTCCCATCACCAATGCTGAGATGTTTGTCACAGCACCAGAGAACCTGGGCTATTCCTACGAAGCTGACTGGccatCCCGGCCCGTCACTCTGACTGAGATCATCACCATCGCTGTGGTAGCAGCCCTCATCGTGGTGGCGGTCATCTTTGCCATCACCACGTGCGCCGTCCGCTCCAAAACGTACAAGATGGACGGCCGTCAGCCGCTGCTCGGAGAACAGTACCAGCGCTACGATGATCACGACAGACACAGCGACAAGACCCAGTCTGTGGTTTAAAACCACTGGTGCTAGAAAACCCAACCACTGCCCTCTATCTCTCAGACATTTTGTATCGTTTTCACGTCATAGATAGAGAAAGAGCCTACGCCATTAAATTTTGTATGAAAGATATTTACGAAAAAAAGGAGACGTGCCCTAAGCCATATGTAGCCAAAGTCTGGGCACAGCTGGTAACATAGAACGATAATGCCTAATTCACTTAGTTTGATGTTTTAAATGACACAATATTAGGTGCTAACATTGCTTTGGTAATTGTTTTGTGTAAATttgtaaacatatatttttaattggtcattatttaactgttttcatttgaatgaatacaataaaaagaCTTTTACCACACGCA

Function

symbol description
tyrp1 Enables monophenol monooxygenase activity. Involved in positive regulation of melanin biosynthetic process. Located in clathrin-coated endocytic vesicle membrane and endosome membrane. Implicated in oculocutaneous albinism; oculocutaneous albinism type III; and pigmentation disease.

NR:

description
PREDICTED: 5,6-dihydroxyindole-2-carboxylic acid oxidase

GO:

id name namespace
GO:0042438 melanin biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0033162 melanosome membrane cellular_component
GO:0016716 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005507 copper ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681550.1 True 1609 mRNA 0.52 6 14200223 14207686

Neighbor

gene id symbol gene type direction distance location
lurap1l lurap1l coding downstream 1626 14187676 ~ 14198597 (-)
drap1 drap1,LOC106608686 coding downstream 141588 14050730 ~ 14058635 (-)
LOC103028152 NA coding downstream 372324 13813398 ~ 13827899 (-)
LOC103027614 LOC103027614 coding downstream 392894 13799521 ~ 13807329 (-)
mpdz mpdz coding downstream 1321203 12816580 ~ 12879020 (-)
LOC103042598 crgm2,LOC103042598,LOC108427435,LOC108427436,LOC108260664,LOC108260584,LOC108260580,LOC108441183,LOC108260581 coding upstream 131028 14338714 ~ 14340598 (-)
LOC103043225 NA coding upstream 1051691 15259377 ~ 15261518 (-)
LOC103042179 NA coding upstream 1057422 15265108 ~ 15303915 (-)
LOC103041667 ldb2b,LOC108434309,LOC107562611,LOC107750444,LOC108260957,LOC107548319,LOC107671914,LOC107702407 coding upstream 1124449 15332135 ~ 15352286 (-)
LOC103041363 qdpr,dhpr,qdprb1,LOC108437732,LOC107750446,LOC107702409,LOC107562607 coding upstream 1159423 15367109 ~ 15372437 (-)
LOC111195216 NA non-coding downstream 14879 14180105 ~ 14185344 (-)
G184422 LOC104965148,LOC104966956,LOC103385808 non-coding downstream 69128 14128528 ~ 14131095 (-)
G184396 NA non-coding downstream 271910 13928106 ~ 13928313 (-)
G184354 heatr5b non-coding downstream 363805 13834781 ~ 13836418 (-)
G184338 NA non-coding downstream 470280 13724758 ~ 13729943 (-)
G184447 NA non-coding upstream 128260 14335946 ~ 14336641 (-)
LOC111195232 NA non-coding upstream 745758 14953444 ~ 15001573 (-)
LOC103043324 NA non-coding upstream 840061 15047747 ~ 15052870 (-)
G184818 NA non-coding upstream 1165086 15372772 ~ 15379206 (-)
G184816 gtf2e2,LOC107671915,LOC107548363 non-coding upstream 1177028 15384714 ~ 15387101 (-)
LOC103032041 NA other downstream 83767 14063644 ~ 14116456 (-)
trnas-gcu_6 NA other downstream 108633 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 110436 14089706 ~ 14089787 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other downstream 159978 13988809 ~ 14040245 (-)
LOC111195226 NA other downstream 605470 13551132 ~ 13594753 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other upstream 1101823 15309509 ~ 15340580 (-)
smim18 smim18 other upstream 1168972 15376658 ~ 15381208 (-)
smim14 smim14 other upstream 1458425 15666111 ~ 15671954 (-)
lrat lrat other upstream 2690492 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 3022399 17230085 ~ 17241027 (-)

Expression


Co-expression Network