LOC111195165


Basic Information

Item Value
gene id LOC111195165
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 40066 ~ 45653 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681591.1
GTTACCACGCTTAAGCGGCTGTCTGAAAGATGGACAAGGCTTTTGTTCTTGATGGATGCGCTGTGTTTTTGTTCCTCCCTCAAGTTGCTGATTCCTGATAAGGTTTGACGCTGTAAAGACGAGTGATGTTTGCTTTGTTCTGCCACTCCTTCTCCTCCGCCCTGCAAAAGACAAGATGTCAGATGACAGTCCAACTGAAAGATATGGCAAGAAAACGGTAGAATTCCCAGAAAAGATATTGAAGAGAAGGAGGGGACGGAGGAACCGGTCCTACAGGGGGATGACTGGGCATCCGGAGATCAGTCTCTAAACTTCAGAGAAACACAAAAGATACGTCCCAAAGATCTGCTTCAGAAGAAAGATGGCAGCCTGGAGTGGGTGGACTGTGGACGGATCAACTCTTTATAGCATGGAAGGGGCGAAGATAGGTTTGATGTTCTGTGTTGAGACAGAGAACGCTGGTGCTCCCAGGGACATGGACATCATGGACAGGTTCTACAGAAAGTTTGGGTTTGAAGGTGAAATAATAAGACAGCCAAGTAAAGAGTTCATGCTGAGGTCTTTGCAGAATCTTGCCAACTACAGTCCAAAACCAGTCAGCTGCATCCTGATTGCATTCTCCGGTCATGGTGATGAAAAAGTTGGGGAATGGAACGAATCTGAGCTGGTCACCGCTGATCACCAACGAGTGAAAGTGAGCAGCATTACAAGCATTTTTAGTGAGACAAACTGTCCCCGGCTGAAGGGAGTACCCAAGATCTTCATCACTGATGCCTGCAGGGGAAGAATACATGAGTTTGGAGTCATGCACGGCTCAGGCAAAATCCAGGGATTAAGAGCTAAGAATGAGCGTGATGAGGAATACCTCCGAAAATACAGGACAAGCTACCGGTCAGCTGTCATCAACGACATGTTTGCAGTGTATGCAGCAACTCCAGGCAATCCAGCCTACATGGATGAATTGACAGGGGGCTATCTGTTCTTCTGCATTGAAAGAGTGTTTCTGGACCACAGCACAGTCGGAATACACTTCATGGATCTGTTCATAAGGGTGAAGCAGTGCTTCGAAAAAATCAACTCAAGCACATGCGTTGATTTACCACTGCTGACCATGAACATGGAGAGCACCTTCAGCCATCTCCTCTATCTGGGCTAGAGCTGTACTAAAATACAATACCTGCGTTATTCCTCTActactctctctatatatatattattattaagggaccatttcagtttctgaatcagttctctgattttgcttttgtcatttagagcatgtaaagttccgaaatcaatatttggtggaataaccctgctttttaatcacagttttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggcaaatgAAAGAAGTTCATCATtttgagtggtctcttattttttccagagctgtatgcataTATTACATACACTAGTTCTCTAGTAAACTCTTTACgactgtttttctgcacttgtTTTATGAAGTTTTTTTGCGATAAAGATAAAACAGCTGTA

Function

GO:

id name namespace
GO:0048736 appendage development biological_process
GO:0033333 fin development biological_process
GO:0019825 oxygen binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681591.1 True 1662 mRNA 0.43 7 40066 45653

Neighbor

gene id symbol gene type direction distance location
LOC103026105 LOC103353182,LOC103469355,LOC103137796,LOC106954674,LOC102796940,LOC102236590 coding upstream 16100 12979 ~ 23966 (+)
LOC103030568 camk2d2,LOC107714220,LOC107742503,LOC107563926 coding downstream 20228 65881 ~ 107890 (+)
LOC103027206 NA coding downstream 156655 202308 ~ 207014 (+)
LOC111195167 NA coding downstream 199813 245466 ~ 247320 (+)
LOC103031511 NA coding downstream 204823 250476 ~ 256183 (+)
LOC111195169 NA coding downstream 213238 258891 ~ 264780 (+)
G181750 NA non-coding upstream 11077 27415 ~ 28989 (+)
LOC111195166 NA non-coding downstream 47512 93165 ~ 93769 (+)
G181777 NA non-coding downstream 117976 163629 ~ 166044 (+)
G181775 NA non-coding downstream 162093 207746 ~ 208523 (+)
G181782 rps6kb2,LOC108413157,LOC108260512,LOC103368287,LOC104930044,LOC101478146,LOC102204811 non-coding downstream 166182 211835 ~ 231061 (+)
G181797 NA non-coding downstream 223049 268702 ~ 269257 (+)
G181779 cd027,LOC108413410 other downstream 146304 191957 ~ 199996 (+)
G181799 NA other downstream 231018 276671 ~ 278173 (+)
G181801 NA other downstream 236423 282076 ~ 286281 (+)
LOC111195149 NA other downstream 243357 289010 ~ 390166 (+)
LOC111195150 NA other downstream 254442 300095 ~ 306312 (+)

Expression


Co-expression Network