LOC111195168


Basic Information

Item Value
gene id LOC111195168
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 264960 ~ 270360 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681621.1
AACGACACTGAGCAGATGCTAAGAGCAGCAATGGAGGTCCTGTTTGTTGCAGTGTTGCTGTTTGTTGGAGCGATTGCCCGTcCCAACGGTCCTCCAAATGGAGGGGGAAACTTTGGGCCAAACGGAGGAGGAAGGTTTCCTAATGGAGGAGGAAATTTCCCCTTTGCACCTAATGGAGGAGGAAATTTCCCCTTTGCACCTAATGGAGGAGGAAATTTCCCCTTTGCACCTAACGGTGGAGGAAATTTCCCCTTTGGACCTAATGGAGGAGGAAATTTCCCCTTTGGACCCAATGGTGGTGGAAACTTTCCCTCTGGACCAGCGCCTTCTCAGCTGAACTCTTGGTATGGTCAGGATGATTCAGAAGAACAGGGTCCAAATGGTTTTGGACCTTCTGAATTCCGAGGAGGTCCACAAGGAGGTCACAGAGGTCCACATGGGGGTGGAAGAccTGGCGGGCCATTTCGCCCTCCCTTCCGTCCTGATGGAGGAAGACCAGTCCAGCCCAACATCACATTCACCCCTCTGTTCCGGattgaCAATGTGACAGCTCAGaacatCAGTGCCAGTGTGCCCCTGAAacagGGAGAGAATGTTTTCATCCTGCCAGCTGGTTCAAACGGACCACCTCAGCGTCGACCCCCTGTAGCTGGCCCTCAGCCCTACTTCAAGATCATCTACAACCAGAATTCCACTAATATTGCATTTGAATTTGGGACGGCACAGTTTGTTCCCCCTCTTTCGTTATTTGGCTCAGAGAGCGATGAGTATCGTCCGCATTAAGCCTTAAGAGATTATCTGTCTACAATAACACAGGTCAATAAACGTCTGAAGGTCGTGGACCATTATGAGAATTTAACATCTTGAGCATAATTTAGAATTgtgtactttactttacttattcTAAACCGTTTAAATGCATGCAATGTCCTTAAAAACTGAGATGCACCTTTCAAATAATGACCatgatgtttttaaaacattaggaTGGATTATATTTATCTGTGTTCTTGTTTTAATCTCTAAGGGATGGTAAGGTGGAGGGTAACtttttaaattacaaatttattCTGGATATGAAATACCTatcattcattcaataaaacatTCAATCAGCATCTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681621.1 True 1124 mRNA 0.45 17 264960 270360

Neighbor

gene id symbol gene type direction distance location
rps6kb2 rps6kb2,LOC108413157,LOC108260512,LOC103368287 coding downstream 33831 207651 ~ 231129 (-)
LOC103027497 LOC108413410 coding downstream 64981 191958 ~ 199979 (-)
LOC103030885 LOC107692594,LOC107702307 coding downstream 74219 109764 ~ 190741 (-)
LOC111195164 NA coding downstream 229447 28644 ~ 35513 (-)
LOC103030254 LOC108413195 coding downstream 253759 8 ~ 11201 (-)
ctnna2 ctnna2 coding upstream 682639 952999 ~ 1099800 (-)
LOC103026423 ppp2r2ca,LOC103026423,LOC107692591,LOC107563918,LOC107742501,LOC108413194,LOC107562984 coding upstream 1109133 1379493 ~ 1390551 (-)
LOC103024763 LOC108434311,LOC108434344 coding upstream 1143709 1414069 ~ 1421243 (-)
LOC103025290 LOC108434344,LOC108434311 coding upstream 1152679 1423039 ~ 1438417 (-)
trnai-aau_12 NA coding upstream 1257666 1528026 ~ 1528099 (-)
G181853 NA non-coding downstream 2204 220742 ~ 262756 (-)
G181858 NA non-coding downstream 22787 241686 ~ 242173 (-)
G181846 NA non-coding downstream 170371 92965 ~ 94589 (-)
LOC111195159 NA non-coding upstream 52271 322631 ~ 323782 (-)
G181888 NA non-coding upstream 124616 394976 ~ 395203 (-)
G181890 NA non-coding upstream 139866 410226 ~ 410543 (-)
G181891 NA non-coding upstream 143092 413452 ~ 413862 (-)
G181893 NA non-coding upstream 155077 425437 ~ 425995 (-)
LOC103026712 NA other downstream 216666 45736 ~ 48294 (-)
cisd2 cisd2 other upstream 223830 494190 ~ 508064 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other upstream 1315135 1585495 ~ 1712137 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other upstream 3124759 3395119 ~ 3454586 (-)
G182501 NA other upstream 3277273 3547633 ~ 3550413 (-)
LOC103027068 NA other upstream 4836676 5107036 ~ 5109098 (-)

Expression


Co-expression Network