LOC111195169


Basic Information

Item Value
gene id LOC111195169
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 258891 ~ 264780 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681622.1
tttagattcTTCAGCCACGAATAGGAATAATTGCAAGTAACAGCAATGAGatctTACGTCTCAATGGAATCACCCTGGCTGGTATGGGCATGGGCATGGGCATGGGCATGGGCATGGGCATGGGCATGGGAGTGGGCCAAGCACAGGGAACACCGTTATTTTCCCCTTTCCTGATACAACCACAAGCAGACGTCCTTCTGCCTCCACAGATATTGAACTTTGGTGCCCAGTTGCCCTTTTTACCACCCCAACAGAATCAACTGCCGCAAGTACTGATACCCCCCAATCCACAGGAGCAGCCCACCGCCCTGAACCCCAACAACCCTCAACTCAACCAGAACCCTGGCCAGATGGTTCCTCAGTTCTTCCCCTTCCCTCAAGGAACAGGAGGACAGCAGGGATTCCCATATTACCTGACTTATGGCTTCAATGGAGGGAACCCGCAGTTGGGATTTCCACCCAACCAGAAACTGGCCCCACAAATCCCAGTAAGGCCAACTCTGGCCCCCCGGCCACCTGTTCGGAACAATGGAAACATTCTGGAACCATGGCGTTTGACTCCACCCCCTGATAACCGTGGGGACCGCCCTGGCGTTGATgggGATCCTGCATTGTCCTTTTTTAAGCCATAGACATTAATAGTAAAAAGgcaACCTGTTCTCAAGAAAAAGCACTAAGAACTAAGAACTTACAAATAGCACAACTACTGAATTTTGAAAAGAATATTTTCCTGTAACCCATCAATACAACAAATATCTTATTAATTCAAATGCAATAATTAATTAGCATTGTCATGTTTGTATACCAGcggataataaatgcttttgtGTTGAGAA
>XM_022681623.1
tatttagattcTTCAGCCACGAATAGGAATAATTGCAAGTAACAGCAATGAGatctTACGTCTCAATGGAATCACCCTGGCTGGTATGGGCATGGGCATGGGCATGGGCATGGGCATGGGCATGGGCATGGGAGTGGGCCAAGCACAGGGAACACCGTTATTTTCCCCTTTCCTGATACAACCACAAGCAGACGTCCTTCTGCCTCCACAGATATTGAACTTTGGTGCCCAGTTGCCCTTTTTACCACCCCAACAGAATCAACTGCCGCAAGTACTGATACCCCCCAATCCACAGGAGCAGCCCACCGCCCTGAACCCCAACAACCCTCAACTCAACCAGAACCCTGGCCAGATGGTTCCTCAGTTCTTCCCCTTCCCTCAAGGAACAGGAGGACAGGGATTCCCATATTACCTGACTTATGGCTTCAATGGAGGGAACCCGCAGTTGGGATTTCCACCCAACCAGAAACTGGCCCCACAAATCCCAGTAAGGCCAACTCTGGCCCCCCGGCCACCTGTTCGGAACAATGGAAACATTCTGGAACCATGGCGTTTGACTCCACCCCCTGATAACCGTGGGGACCGCCCTGGCGTTGATgggGATCCTGCATTGTCCTTTTTTAAGCCATAGACATTAATAGTAAAAAGgcaACCTGTTCTCAAGAAAAAGCACTAAGAACTAAGAACTTACAAATAGCACAACTACTGAATTTTGAAAAGAATATTTTCCTGTAACCCATCAATACAACAAATATCTTATTAATTCAAATGCAATAATTAATTAGCATTGTCATGTTTGTATACCAGcggataataaatgcttttgtGTTGAGAA

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681622.1 True 836 mRNA 0.47 8 258893 264780
XM_022681623.1 False 835 mRNA 0.47 8 258891 264780

Neighbor

gene id symbol gene type direction distance location
LOC103031511 NA coding upstream 2708 250476 ~ 256183 (+)
LOC111195167 NA coding upstream 11571 245466 ~ 247320 (+)
LOC103027206 NA coding upstream 51877 202308 ~ 207014 (+)
LOC103030568 camk2d2,LOC107714220,LOC107742503,LOC107563926 coding upstream 151001 65881 ~ 107890 (+)
LOC111195165 NA coding upstream 213238 40066 ~ 45653 (+)
LOC103032143 NA coding downstream 42897 307677 ~ 315123 (+)
LOC103032759 NA coding downstream 60856 325636 ~ 329837 (+)
LOC103042564 si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780 coding downstream 67350 332130 ~ 341442 (+)
tacr3 tacr3a,tacr3,LOC108411976,LOC107552719,LOC107746781,LOC107674253,LOC107556806 coding downstream 113448 378228 ~ 426514 (+)
bdh2 bdh2,LOC107746975 coding downstream 198543 463323 ~ 475354 (+)
G181782 rps6kb2,LOC108413157,LOC108260512,LOC103368287,LOC104930044,LOC101478146,LOC102204811 non-coding upstream 27830 211835 ~ 231061 (+)
G181775 NA non-coding upstream 50368 207746 ~ 208523 (+)
G181777 NA non-coding upstream 92847 163629 ~ 166044 (+)
LOC111195166 NA non-coding upstream 165122 93165 ~ 93769 (+)
G181750 NA non-coding upstream 229902 27415 ~ 28989 (+)
G181797 NA non-coding downstream 3922 268702 ~ 269257 (+)
G181798 NA non-coding downstream 6774 271554 ~ 273833 (+)
G181800 NA non-coding downstream 14785 279565 ~ 279790 (+)
G181802 NA non-coding downstream 17589 282369 ~ 282804 (+)
G181811 NA non-coding downstream 67800 332580 ~ 333245 (+)
G181779 cd027,LOC108413410 other upstream 58895 191957 ~ 199996 (+)
G181799 NA other downstream 11891 276671 ~ 278173 (+)
G181801 NA other downstream 17296 282076 ~ 286281 (+)
LOC111195149 NA other downstream 24230 289010 ~ 390166 (+)
LOC111195150 NA other downstream 35315 300095 ~ 306312 (+)
G181818 NA other downstream 126834 391614 ~ 392130 (+)

Expression


Co-expression Network