LOC103032143


Basic Information

Item Value
gene id LOC103032143
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 307677 ~ 315123 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681624.1
GAGAGTGAATATAAACCAGGCGGCTCTCACTGCCTTTCACCCAGCGCTGCTCATCAGCTCCACTACTGACGGCCTTCATCGCCAGCTCAACCTCAGGATCGTATCTCTACTCTGCGGACAGCAGTTCACTTCTACAGCCATGTGGAGCTCCATCCTCTGCCTGTCTTTTGTCACAATGGTGTCTTCTGCACCGATATCACCATTCTTCAACTACTTGCCGCACTATGGAAATCCAAGACCTGGACCTTCTGCACagGGCACTAACGACTTCTTCTCTACCAATGGACAGCCTGCTTTCAACGCCCCCATCAGTATGGAGATTGTCTTTCCTCCACAGTTCCAGGGATCTCCAGTAGGAGGAGCTGGTGCTGGACCTGCTTTCCCATCCCAGGGCTTCATCAAATACTCTCTTCCTAAGGTTCCCGGCAGAAAGAGTGTGGAAATTTACTACCCCTATGACTTCACGCAGCAGAGACAGATGATGCCAAGTGTTCCCATGATGCCTGCAGTTCCTCAGCTCCCAGGCCTTGTCACTTTCGATAACCCACCACACAACGTTCCCCAGCAGCAGCCCCCCAGAGCTTCTCCTCCACAGTCTAACGATCCTCATCCACAGATTATGCACGatcagccagtccagacaggcCAGACTCCAATCAACCTCTAAACACTGAAGaaatctCCTTGATGTTGAATTCCTACATCAGCATGGATCTTAtggtttttatttaataactaataacAGTTAGAGTAAGTGAGCTGCCTTATGAGAAGGAAGctgattatttaatataatattagtgcTGTAGAGTGACCTGTTTTATACAGGCCtggatttaaaacaaaaaaacatctacactctctcactctctctgtgcaGAGACAAAGCCACACATTTAAagttatagaaataaaaaaaggaattaaattatctctttttttattgaatatggATGTTTGGAAGAAGTTGGTTGTATGTGAATATTGTTTGTAGAAATAAATTCAATAACATTTCAATAAATTCTACCTTATTGCTTA

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681624.1 True 1038 mRNA 0.44 12 307677 315123

Neighbor

gene id symbol gene type direction distance location
LOC111195169 NA coding upstream 42897 258891 ~ 264780 (+)
LOC103031511 NA coding upstream 51494 250476 ~ 256183 (+)
LOC111195167 NA coding upstream 60357 245466 ~ 247320 (+)
LOC103027206 NA coding upstream 100663 202308 ~ 207014 (+)
LOC103030568 camk2d2,LOC107714220,LOC107742503,LOC107563926 coding upstream 199787 65881 ~ 107890 (+)
LOC103032759 NA coding downstream 10513 325636 ~ 329837 (+)
LOC103042564 si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780 coding downstream 17007 332130 ~ 341442 (+)
tacr3 tacr3a,tacr3,LOC108411976,LOC107552719,LOC107746781,LOC107674253,LOC107556806 coding downstream 63105 378228 ~ 426514 (+)
bdh2 bdh2,LOC107746975 coding downstream 148200 463323 ~ 475354 (+)
LOC103047018 LOC108434388 coding downstream 160548 475671 ~ 495422 (+)
G181802 NA non-coding upstream 24873 282369 ~ 282804 (+)
G181800 NA non-coding upstream 27887 279565 ~ 279790 (+)
G181798 NA non-coding upstream 33844 271554 ~ 273833 (+)
G181797 NA non-coding upstream 38420 268702 ~ 269257 (+)
G181782 rps6kb2,LOC108413157,LOC108260512,LOC103368287,LOC104930044,LOC101478146,LOC102204811 non-coding upstream 76616 211835 ~ 231061 (+)
G181811 NA non-coding downstream 17457 332580 ~ 333245 (+)
G181816 NA non-coding downstream 117416 432539 ~ 433567 (+)
G181820 NA non-coding downstream 129958 445081 ~ 445298 (+)
G181821 NA non-coding downstream 177475 492598 ~ 500981 (+)
G181927 NA non-coding downstream 314784 629907 ~ 663519 (+)
LOC111195150 NA other upstream 1365 300095 ~ 306312 (+)
G181801 NA other upstream 21396 282076 ~ 286281 (+)
G181799 NA other upstream 29504 276671 ~ 278173 (+)
G181779 cd027,LOC108413410 other upstream 107681 191957 ~ 199996 (+)
G181818 NA other downstream 76491 391614 ~ 392130 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other downstream 2142441 2457564 ~ 2460672 (+)
LOC111195173 NA other downstream 2210560 2525683 ~ 2569294 (+)
G182356 NA other downstream 2941244 3256367 ~ 3258850 (+)
G182361 NA other downstream 2972815 3287938 ~ 3290258 (+)

Expression


Co-expression Network