LOC103042564 (si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780)


Basic Information

Item Value
gene id LOC103042564
gene name si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 332130 ~ 341442 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681628.1
TGGAACAGAGCGACGTTACACCTCACAGACTAATTACCCAGACTccccttcttctcctccacacCAACATACTGTTCCCTCCATTCTAATACACTGCTTTTTCAATCTGGGTGGAGCTGAATGATACAGAAAAGGATTTCTGATGCTTTTCTCAAGAACTTCAACCAAGAAAAGATGATCAGGCTACTATGCTGAGAGGATAAGTCTGCTAAGTTTGAACTAAGAGATAAGAGACCATGACGATTGTGACCAATAAGACGACTCTTGCGGTGCCTCCTTCAGGAGAAGATAATGAGGATCCTCGTCCTCCTGCGACTCCGAGACGCCTCTTCAACGTGAACAACAGCAACAATAACGAGGAagaAGAAAAGGACAAAAAGGAGACAAAGgagaacaaagagaaaaaagagaaaaaggaaaagaaagaaaagaagaagaagaaagaagacaaGGAACaggagaatgagaaagagaaggaaaaggaaaaagagaaggaaaaggagaaggaaaaagagaaagaaaaagagaaggaaaaagaaaaagaaaaggaaaaagagaaggaaaaagaaaaagaaaaagagaaggaaaaaccGAAAGACAAAGATAAGGACAAAAAGGAAGGGCCTAAGGAGGTGTTTGTGATTAATCCAGCCAGTAACCTGTATTACCAGTGGCTGCTGCTCATCACCTGTCCAGTCATGTATAATTGGACAGTCATCATCGCAAGagcAAGTTTTGAAGATCTCCAGCATAAATATCTGATGACATGGTTCTTCCTCGACTACATCTGCGATTTGCTTTATGCTGCTGATGTAGCCTTCAGGGCACGGACTGGATACCTTGAGCAGGGCTTGCTCGTCAAAGACGAGAAGCTCCTGCTCAAACACTACACGTCCAGCTTTCAATTCCGACTTGATGTCGTCTCCATGATCCCCACTGACGTGCTGTACTTCGTCCTGGGGCTGGACTACCCCGAGATCCGCATCAACAAACTGCTGCGCATCAGCCGCATGTTCGAGTTCTTCGACCGCTCCAAGGCCATGACCAACTATCCCAACTTGTTTGGCATCTGCACTTTGGTCAtgtacatcatcatcatcatccactgGAACGCATGCATGTACTTCTCTTTCTCCAAAGCAATCGGCTTTGGTGCGGATCCCTGGGTTTACCCTTCGCTCGAGGAGCCGGAGTTCGGGGACCTTTTGAGAAAGTACTCCTTCAGCCTTTACTGGTCCACCCTCACGCTCACTACCATTGGTGAAATGCCCTCCCCTGAGCAGGACTCTGAGTTTTTCTTCCATGTGGTGGACTTCCTGATGGGTGTGCTGGTCTTCGCCACGATTGTGGGCAACATCGCCACCATGATCTCGAACATGAACGCAGCGCAGGCCAAGTTCCAGGCTCGCATTGACAACATCAAGCAGTATATGCATGTGCGGCACGTCAGCAAGGACTTGGAGGTGCGCGTCATCAAATGGTTCGATTACCTGTGGACCAACAAGAAGGCGCAGGATGAAAGAGAGGTGCTGCGGTATCTTCCAGACAAGCTGCGGGCGGAAATTGGCATGAACGTACATCTGGACACCTTAAAAAAGGTGAGGATCTTTGCAGACTGCGAGGCTGGCTTGATGATTCAGTTGGTGCTCAGGTTGCAACCTCAAGTCTTCAGTCCCGGTGACTACATCTGCCGCAAAGGTGACATCGGGCGCGAGATGTACATCATCAAGGAAGGAAAGCTGGCTGTGGTGGCTGATGACGGAATTACACAGTTTTGCGTTCTGGGTGATGGCAGCTACTTTGGGGAGATCAGCATCCTGAACATCAAGGGCAGCAAAGCCGGGAACCGGAGGACGGCCAACATCCGGAGCATCGGGTACTCTGACCTCTTCTGTTTGACCAAGGATGACCTGATGGAGGCCTTGACTGAGTACCCCGAAGCCAAAACCATGCTGGAGGACAAGGGACGGCAGATCCTTTTGAAAGACGGTCTCCTGGACCTGGATCCAGCCAATATCAAACCAGACCAGAAGGACCTTGAGGAAAGAGTGAGCCGCATTTACGGCACCATGATGCTGATGCAGGTCAAAGTCAAGAAGCTGCTTGGAGATTACGAGAAAACCGAGAAAAACCTCAAACAGCGCATCAAACTGATGGAGCGTTACACAGGGGAGGAggtggaagaggaggaggaggaggaggaggtaaaggaggaagagaagaaggaAGAGGATGCTGCACCAGAGCCAGAGAAGAAAGATGATGAGGAGGAGAAGCCTGCAGAGGAGAAGAaggctgaggaggaggaggaaacaaagccagaggaggaggaggaggaggataagAAGACAGACGAGGAAGAGAAGATGAAGACAGATGAGTAGAATTGAATTAGTTTAAACTGAGCAACTGTGCAATAAAATGTTTTCCTCAAgtttgaaaaatatggtaacttcGTGTTTTAAGAGTTGCTCAGGACTAAGACACTAAGGGATGAATTATACTTCTGCGTCGAGTCAACTGTCTACAGCGTAGCCTGTGCAAGTGGCCTACGCCGTTGTGAGCATTTATAGTTGTGCTGGTGCGTCCGCATTGCTGTAGAGTTTAATTGTGCAGGTGGAAATGCAAATGTATGCGACCAAGATACACATATTATAGGCTGTATATTCGACACAGAAGCATAAATTGGCCTTAAGACTCTATGGTACTATGGTCCTTAGGCTGCAAGTTCGAAAAACCCAGGTCATGCTccttcagcatcagcagccagagcccgaGATAGCACAACTGACCTTTCTCTCTATGGGTGGGTTTTGTAGATAGTGCTCTATCCCCTCATTACTCCCATTGTGACGTTGCCCAGCACtggcatctgttggctgatgcTTCAGCGCAGAGTATCTGTCAGTTGTTTTGGAAAAGGCTCTCCTAGTGAAGGGAGCATTGCAATTCTCATTTGGGGCTTTCACATAGGTGAAATTTGGGCTAGGTGGGCTCCAGGTGGGCCTGGAAGCTTAATTTAGCTCAATTTAAGCTCACATGGGTCTTATTTAGGACCCTGGTTCAATGTTCAACCCCTTCTGGTCCCTTTAATGACCTTGTTATCTGGTTAGGATAATTGGATAAGCTAATTGTAAggtaaataacaaaaataaatatgacaaCATGTAGAACATTCTGGAACACAACCCAGCagttaaaataaatagcaaacAAATCTGTGGTATTGCATGAAGTGTTTAGTTCCCCAGACCCTGATTATGTTTAGTCCTGTGCTAAAAAGGGCTTTTCGAATGTAAATCACCACTTGCACTACAATTTAGCAATCTGCGTCCACATAATCagccctgtttgtttatgtcaCGTTTTGAATGGCTCTCACACATGTTAATACTAGTAAATTAGGCCCTTCTGTATTCATAGCCAATCGCCAGCTCAACATAAGTGGTGACCAATCCCGCACCTGGAGCTTCACCTCCTCACACAGAAGATTTCCTTTCCAGTCCAAACCCAATGCAGCCAATTTAACCAATCAAACACTTTCAAAGGCACTATTTGTATATAAGTGTATGTATAATGTAGGGTGCTCAATGGTTGGGAGTTAAAGTGCAATCAGAAGATTAAGAACTGGTCTGTTGACCAATGGTCTCCATGATCTTCAGTGGCAGTACACTCAAATGACCACTGGACTGCAGCAGAGAGTTGGACAAATGTTCTGAGAATGATGAATTTAGTATATGAATACATGATGAATTGTTCTTTTAGGGTTGTATAAATGTGATGTATGGAAACTTCATTTTATTAACTTCATCAGTTAATTATAGTCATCATTTTACAATATTCATTGATAGAGTAACTTTAAAACCATGCTCTCTTCA

Function

NR:

description
PREDICTED: cGMP-gated cation channel alpha-1-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0007603 phototransduction, visible light biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005222 intracellular cAMP-activated cation channel activity molecular_function
GO:0005223 intracellular cGMP-activated cation channel activity molecular_function
GO:0030553 cGMP binding molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K05391 CNGC; cyclic nucleotide gated channel, plant

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681628.1 True 3878 mRNA 0.46 7 332130 341442

Neighbor

gene id symbol gene type direction distance location
LOC103032759 NA coding upstream 2293 325636 ~ 329837 (+)
LOC103032143 NA coding upstream 17007 307677 ~ 315123 (+)
LOC111195169 NA coding upstream 67350 258891 ~ 264780 (+)
LOC103031511 NA coding upstream 75947 250476 ~ 256183 (+)
LOC111195167 NA coding upstream 84810 245466 ~ 247320 (+)
tacr3 tacr3a,tacr3,LOC108411976,LOC107552719,LOC107746781,LOC107674253,LOC107556806 coding downstream 36786 378228 ~ 426514 (+)
bdh2 bdh2,LOC107746975 coding downstream 121881 463323 ~ 475354 (+)
LOC103047018 LOC108434388 coding downstream 134229 475671 ~ 495422 (+)
suclg1 suclg1 coding downstream 168209 509651 ~ 540134 (+)
lrrtm1 lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618 coding downstream 806656 1148098 ~ 1153043 (+)
G181802 NA non-coding upstream 49326 282369 ~ 282804 (+)
G181800 NA non-coding upstream 52340 279565 ~ 279790 (+)
G181798 NA non-coding upstream 58297 271554 ~ 273833 (+)
G181797 NA non-coding upstream 62873 268702 ~ 269257 (+)
G181782 rps6kb2,LOC108413157,LOC108260512,LOC103368287,LOC104930044,LOC101478146,LOC102204811 non-coding upstream 101069 211835 ~ 231061 (+)
G181816 NA non-coding downstream 91097 432539 ~ 433567 (+)
G181820 NA non-coding downstream 103639 445081 ~ 445298 (+)
G181821 NA non-coding downstream 151156 492598 ~ 500981 (+)
G181927 NA non-coding downstream 288465 629907 ~ 663519 (+)
G181934 NA non-coding downstream 334477 675919 ~ 676207 (+)
LOC111195150 NA other upstream 25818 300095 ~ 306312 (+)
G181801 NA other upstream 45849 282076 ~ 286281 (+)
G181799 NA other upstream 53957 276671 ~ 278173 (+)
G181779 cd027,LOC108413410 other upstream 132134 191957 ~ 199996 (+)
G181818 NA other downstream 50172 391614 ~ 392130 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other downstream 2116122 2457564 ~ 2460672 (+)
LOC111195173 NA other downstream 2184241 2525683 ~ 2569294 (+)
G182356 NA other downstream 2914925 3256367 ~ 3258850 (+)
G182361 NA other downstream 2946496 3287938 ~ 3290258 (+)

Expression


Co-expression Network