tacr3 (tacr3a,tacr3,LOC108411976,LOC107552719,LOC107746781,LOC107674253,LOC107556806)


Basic Information

Item Value
gene id tacr3
gene name tacr3a,tacr3,LOC108411976,LOC107552719,LOC107746781,LOC107674253,LOC107556806
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 378228 ~ 426514 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681629.1
GGGGCGTCCAGCACCATTTGCCCTCCCAGTTTGGCAGCGCTGGAATCAATCGACCCCCTCCACTCCTCCCTCCccttttctccatctctctttctctctctctatggacAATCAACAGGAGGGAGAGGAAGGAGCGCGCGCACACAGAGGGAATTCAGAGTTACTGAGCTAACGTTACTGATTGGACTTGCTTTTGACGTGCAGCGCGCGCGAGGCTGAAGTGGAGCCACCTGCCCTTTATACACACCGGCGATGCAGCAGCGCGCGCTAGCGTGATCAGCGCGTGCCAGGTACGTTGTGAGGAGCCAGCCAGCGCGCGCTCCGCAGGAACCCGCGTGcgcctctcactctctctcgcgctcgcgCGCCATGGCACAGTCCCAGAACGGCACCGCGCTCCCGGGGAACCTCACCAACCAGTTCGTGCAGCCCCCGTGGCGCGTGGCGCTCTGGTCCCTCGCCTACAGCACCATCCTGGGCGTGGCCGTGTTCGGGAACCTAGTGGTGATGTGGATCATCCTCGCGCACAAGCGGATGCGCACCGTCACCAACTACTTCCTGCTGAACCTGGCCTTCTCGGACGCGTCCATGGCCGCCTTTAACACGCTGGTGAACTTCGTGTACGCCACGCACGGGGACTGGTACTTCGGAGAGGCGTACTGCAAGTTCCACAACTTCTTCCCCGTCACCTCCGTGTTCGCCAGCATCTACTCCATGACTGCTATAGCCGTGGACAGGTACATGGCTATAATTCACCCGCTGAAGCCTCACCTGTCGGCCACGGCTACTAAAGTGGTGATCGTGTTTATCTGGGTGCTGGCGGTTGTCCTGGCCTTCCCCCTGTGTTTCTTCTCCACCATCAGAAAATTACCCAAGAGGACTCTGTGCTACGTGGCCTGGCCCAGATCCAGCGAGGACTCCTTCATGTACCATATCATAGTGACTGCACTGGTGTACATGCTGCCCCTGGTGGTGATGGGGATTACCTATACTATAGTGGGGGTGACGCTATGGGGAGGGGAGATCCCTGGAGACTCGTCGGATAATTACCACGGTCAGCTGCGTGCAAAGAGGAAGGTGGTGAAGATGATGATCATCGTGGTCGTGACCTTTGCCATCTGCTGGCTGCCGTACCACGTGTACTTCCTGATTACAGGCCTGAACAAGCAGCTGGTGAAGAGGAAGTCCATCCAGCAGGTCTACCTCGCGGTCATGTGGCTCGCCATGAGCTCCACCATGTACAACCCCATCATCTACTGCTGCCTCAACAGCAGgtTTCGTGCCGGCTTCAAGCGAGCGTTCCGCTGGTGCCCCTTCGTCCGCCTGTCCAGCTACGACGAGCTGGAGCTGAGGGCTACGCGTCTGCAGGTGGCCCGGCAGAGCAGCATGTACACCCTGTCCCGCATGGAGACCACCGTGGTGGCGGTGTGCGACCCGACGGAGCCTTCGACCAACCCGACCCGAAAAAGCCTCCTGAACCACCACCCCAACGGCTGCTCCCACTCCACCAAGAGCAGAGCGATCACCTACACGCCCAGCGACCCTCAGGAGGAGTTCTGCTGAAGACCGTGTGCCAATGCTGCAGTACTCGGGGGGACGACGGACAGAAGGAACATCTTGCCTCGTTTATCTTTCGCTCCATTTTATTGTGCATCTTAAATGAAGATTGAGAGATGAAGTGTATTTGAGGCCTGTTGTTGTGGGTTTTAGTCATTAAGGgccaaaaa

Function

symbol description
tacr3a Enables tachykinin receptor activity. Predicted to be involved in positive regulation of flagellated sperm motility. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and sperm midpiece. Is expressed in several structures, including adipose tissue; brain; liver; pleuroperitoneal region; and retina. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 11 with or without anosmia. Orthologous to human TACR3 (tachykinin receptor 3).
tacr3 Predicted to enable tachykinin receptor activity. Involved in positive regulation of flagellated sperm motility. Located in sperm midpiece. Implicated in hypogonadotropic hypogonadism 11 with or without anosmia.

NR:

description
PREDICTED: neuromedin-K receptor-like isoform X2

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004995 tachykinin receptor activity molecular_function

KEGG:

id description
K04224 TACR3; tachykinin receptor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681629.1 True 1727 mRNA 0.58 5 378228 426514

Neighbor

gene id symbol gene type direction distance location
LOC103042564 si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780 coding upstream 36786 332130 ~ 341442 (+)
LOC103032759 NA coding upstream 48391 325636 ~ 329837 (+)
LOC103032143 NA coding upstream 63105 307677 ~ 315123 (+)
LOC111195169 NA coding upstream 113448 258891 ~ 264780 (+)
LOC103031511 NA coding upstream 122045 250476 ~ 256183 (+)
bdh2 bdh2,LOC107746975 coding downstream 36809 463323 ~ 475354 (+)
LOC103047018 LOC108434388 coding downstream 49157 475671 ~ 495422 (+)
suclg1 suclg1 coding downstream 83137 509651 ~ 540134 (+)
lrrtm1 lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618 coding downstream 721584 1148098 ~ 1153043 (+)
LOC103025599 NA coding downstream 964897 1391411 ~ 1412738 (+)
G181811 NA non-coding upstream 44983 332580 ~ 333245 (+)
G181802 NA non-coding upstream 95424 282369 ~ 282804 (+)
G181800 NA non-coding upstream 98438 279565 ~ 279790 (+)
G181798 NA non-coding upstream 104395 271554 ~ 273833 (+)
G181797 NA non-coding upstream 108971 268702 ~ 269257 (+)
G181816 NA non-coding downstream 6025 432539 ~ 433567 (+)
G181820 NA non-coding downstream 18567 445081 ~ 445298 (+)
G181821 NA non-coding downstream 66084 492598 ~ 500981 (+)
G181927 NA non-coding downstream 203393 629907 ~ 663519 (+)
G181934 NA non-coding downstream 249405 675919 ~ 676207 (+)
LOC111195150 NA other upstream 71916 300095 ~ 306312 (+)
G181801 NA other upstream 91947 282076 ~ 286281 (+)
G181799 NA other upstream 100055 276671 ~ 278173 (+)
G181779 cd027,LOC108413410 other upstream 178232 191957 ~ 199996 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other downstream 2031050 2457564 ~ 2460672 (+)
LOC111195173 NA other downstream 2099169 2525683 ~ 2569294 (+)
G182356 NA other downstream 2829853 3256367 ~ 3258850 (+)
G182361 NA other downstream 2861424 3287938 ~ 3290258 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other downstream 3943403 4369917 ~ 4431946 (+)

Expression


Co-expression Network