LOC103047018 (LOC108434388)


Basic Information

Item Value
gene id LOC103047018
gene name LOC108434388
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 475671 ~ 495422 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681630.1
CTGATAATCTAAATCTGTCAGAAATCTTCTTGTCCTGaaaatttatttcatattttacaaaaacagaattttaaggTTATACATCAGTGTACCGATTCACTGCATGaatatttaagttaattgtAGATATTCTCACATATGAGTACCAAATTCTTCTTCAGTACTAAAGCCACCAGAGCATGAAGTTTTTAGTTAAGTACATTGATTGtacagtgatgtaaaaaaaaaagtgtttgccccttcgtgtattttatttatttcttttgtgcATGTTTGTCAGTCTTTCTTATGTCTCTTTCTTATGGTAGAGTCATGAACACTGACATTAACTGAGGAAAGTGAGGCCAGCAGTTCTTTGCATGCTGTTGTGGGGTCTtatgtgacctcttggatgagttgccCCTGccgtattatattatttattatgccgaataaaacatacaggcttctgaacagatttatttaccacagaatgtaaTTGAGGCATATTTTTGAAAAGCCTTTTCATTTTGGCCATATAGAAATTCAGCTTAGATACTGCACCCAAAATATGGGCATATGAGGACTACAAAATGACGCAGGACTGCAGTGGTCTATTTATGTGAAAGCAAGCATGCTGCCCACTCACCCACTGGCACCAGCTAATCTGCTCTGTTTACTCCTCTTTTTGGATGGGTGTCTCAAACCCATATAGTGTAGGGAATCTGTTTTCCCTACACTATATCAGCATTGAGATTCTTATAGCGCCGTATGCGGAAGTTCCCTAGATAGGGAGCTACGAGTTGGTTTGAGACGCGGGTTGATTCAAATCCGCTACTCGGTACATGGGCCCTTTTCACAAAGCTTGATGACGGGTTTCCTTTAGCAGTGTACCGCAGCTAACGCAGGAAGGACATCCCGGACTGCAGCATGGACTTGGGTAGGCTGCTGGAGTGAACGCCCAGTTAGTGGGCAGTAGCAGAGATGCCGTTCACCACTGACCACTGCACCACCGGGAGGATGAAGTAAAGGAGCCGTGCCATGGACGATGTCCAGTCTAGACCTCACTCTTCCCGCTCTGTCTGTTCTCAGAGAACCGAGGATGAAGCTCCAGTGGTGGGGAACCATGCTGAGCATCACCTCTCGGTCAATCAGACACTCCAGGTCTTGGTCAAGCGACCCGACAGTCCGAGCACCACCGTAACAGAGGAGATGGTGTTTATCCCGCGGGTGGTGCACTCCGTGGATGCCTGTACCAACACTGACCCGCCTCACAAATGCTGCGGATGGCTGCGGCGGCTGTGCCCCTGCCCGCCCCGGGGCCTGCTCGCCTCCATCATCACCAAACTGTCTATGGCTGGAGTGCTGTTTGGGGTGGTTTGGTCCATTACAGAGAAAGAGTGTTTACCTGGAGGAAACCTGTTCGGCATCgtctcagtgtttctctgcgCTCTTACTGCGGGAAAGCTGGTGGAACTCATCCGCCTCCCCAACCTTCCACCTGTTCCTCCTCTACTGGGTATGCTCCTGGCAGGGGTTCTCCTCAGAAACATCCCAGTGGTGACGGAAGCGGTCTACATCGACTACAGGTGGTCGGCCTCCCTGAGGAACATCGCCCTGGCTGTTATCCTGGTCAGAGCTGGACTGGGGCTGGATGCCGCGgccCTTAAGAAACTGAAAGCAGTGTGTGCACGTGTGGCCATAATGCCCTGCGTCATAGAAGCTTCCACCGTGGCACTGATATCCTACTGCCTCATGGGCCTCCCCTGGATCTGGGGCTTCATACTGGGGTTTGTTCTTGGAGCTGTATCTCCTGCAGTGCTGGTTCCATCCATGCTGCTGCTACAGAAGCAAGGctatggagcagagcagggcaTTCCCTCATTGCTGATGGCAGCCTGCAGCTTTGATGATATTCTGGCCATCACAGGCTTCACCACCTGTCTGGGCATCGCTTTCGCTACAGGCTCCACATGGTTCAACGTTCTTCGAGGGGGTTTGGAGGTCTTGGGAGGGATGGCTGCTGGTGTGGCTTTTGGTTTCTTTCTTCGTTATTTTCCCAGCAGAGACCAGAAAGACCTGCCTCTGAAGCGCTCGTTCCTGCTGCTGGGTCTGgcagtgtttgctgtgtttggcAGTAACGTGGCGGGGTTCCCGGGCTCAGGAGGACTCTGTACACTGATACTGGCCCTCATCGCTGGAATGGGGTGGAGAAAAGCCAAGgttCCTGTAGAGGAGATTGTGGGCCAGGTGTGGGATGTATTCCAGCCTCTTCTGTTTGGGCTCATTGGAGCTGAGATCACCATCAGTACTCTGGACCCAAACTCAGTGGGCCTGGGAATAGCAACCCTCCTTATCTGCATTACTGTACGAGTCTTCGTCACCTTCGTCATGGTGCTGTGCGCTGGATTTAACAAGAAAGAGAAGCTGTTTATCTCTCTGGCCTGGTTACCTAAAGCCACCGTTCAGGCTGCCATCGGTTCGACAGCTCTAGACGTGGCGCGCTCAAAGCAGGACAGTCAGATGCAGAAGTATGGAATGGATGTGCTGACCGTGGCTGTGGTGGCCATCCTCATAACAGCCCCTATTGGAGCTTTAATCATTGGCCTGTGTGGACCACGCCTTCTGCAGAAACCAAAGAATCCTGAGTGGGCTGTAAGTCAAAGTGCGCTGTCGGGGTCAGACACACCAGTCACCTATGAGAGTGCAATCTGAGGCTGTTCCAGGTCATTAAAGTGATCACCAACCTTCCTGCTGGCTCTGTGGCACTTCACAGGGATTTCCTAGGGGTTTTCCAGGACTGTCATTGGCTGGTTCCCACTGTGGTTGGGGGATTCACCAGTGTATTTTTGGACACTGTACTGGTGCACTGGAGCAGTCTTATCACTGTCCTTCAACCCAACACCTCAATCACCTCAACCCCCCCAACAACTGCTGGGAGACTTCTGAACACTGAATCAAAAAGTTACCAGTACCAAAGACACTACCTGAATCAAAGTGGACACAcctgattcagattcagatcagTCTGGATTCTAAatggaccttttttttttactttgttggtTTTTCATCATCTTCCATCAAATTGTCATGACCTTGATGCCTCTGAAACATCTGTGATATTGTCCTGGTTCACGTCAcactaaagtttttttaaacagattatCTGTAGGCTTGCACTAAAATGGAAAATGAATACCAAATAccagaaaatattcagaaaaacatcaaacagagtcgatcaggaaaagcacaccATGTCTACGCCAACTCGTGAAGTCATGGCCTTGCTCACTTCGGCTCGCGACcgcccacacacagcagagctgaAGCTGACACGTCGTCATCAGACAGGAGCTGACAGCAccaggaacagcatggcagttggttcctgtgttatttgtgcgaataacaaatcagtgttatatgctctGGCCAGTAATTAAGATCTTatgaacaaatggttagaatttgtctatggaggaaaaacaccaccagcaaagtacaattgagataggtaggtgtgtatttttagaacagttctgtttacactagttaaaagtaaaattgaCCCCTaagcgttttacagagactcgaAGACTAGGTCAGCGGCTGAACAGCACACTCCTCCACCGaattaaagcagtgttatactggatcaccggagcactttttttttttttccacaataaaCAGCTCACATAGCATTCA

Function

NR:

description
PREDICTED: mitochondrial sodium/hydrogen exchanger 9B2-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015299 solute molecular_function

KEGG:

id description
K23994 SLC9B1_2; solute carrier family 9B (sodium/hydrogen exchanger), member 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681630.1 True 3693 mRNA 0.48 13 475671 495422

Neighbor

gene id symbol gene type direction distance location
bdh2 bdh2,LOC107746975 coding upstream 317 463323 ~ 475354 (+)
tacr3 tacr3a,tacr3,LOC108411976,LOC107552719,LOC107746781,LOC107674253,LOC107556806 coding upstream 49157 378228 ~ 426514 (+)
LOC103042564 si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780 coding upstream 134229 332130 ~ 341442 (+)
LOC103032759 NA coding upstream 145834 325636 ~ 329837 (+)
LOC103032143 NA coding upstream 160548 307677 ~ 315123 (+)
suclg1 suclg1 coding downstream 14229 509651 ~ 540134 (+)
lrrtm1 lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618 coding downstream 652676 1148098 ~ 1153043 (+)
LOC103025599 NA coding downstream 895989 1391411 ~ 1412738 (+)
uchl1 uchl1,LOC107548360,LOC107709457 coding downstream 946028 1441450 ~ 1446518 (+)
LOC103024236 NA coding downstream 952280 1447702 ~ 1517348 (+)
G181820 NA non-coding upstream 30373 445081 ~ 445298 (+)
G181816 NA non-coding upstream 42104 432539 ~ 433567 (+)
G181811 NA non-coding upstream 142426 332580 ~ 333245 (+)
G181802 NA non-coding upstream 192867 282369 ~ 282804 (+)
G181800 NA non-coding upstream 195881 279565 ~ 279790 (+)
G181927 NA non-coding downstream 134485 629907 ~ 663519 (+)
G181934 NA non-coding downstream 180497 675919 ~ 676207 (+)
LOC111195161 NA non-coding downstream 229659 725081 ~ 739466 (+)
LOC103046702 NA non-coding downstream 419837 915259 ~ 993969 (+)
G181955 NA non-coding downstream 422908 918330 ~ 924178 (+)
G181818 NA other upstream 83541 391614 ~ 392130 (+)
LOC111195149 NA other upstream 85505 289010 ~ 390166 (+)
LOC111195150 NA other upstream 169359 300095 ~ 306312 (+)
G181801 NA other upstream 189390 282076 ~ 286281 (+)
G181799 NA other upstream 197498 276671 ~ 278173 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other downstream 1962142 2457564 ~ 2460672 (+)
LOC111195173 NA other downstream 2030261 2525683 ~ 2569294 (+)
G182356 NA other downstream 2760945 3256367 ~ 3258850 (+)
G182361 NA other downstream 2792516 3287938 ~ 3290258 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other downstream 3874495 4369917 ~ 4431946 (+)

Expression


Co-expression Network