suclg1 (suclg1)


Basic Information

Item Value
gene id suclg1
gene name suclg1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 509651 ~ 540134 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681631.1
GGCTCGGGTCAGGCGGATATGAGGCTCCGCGGCGTGTGACGTCTCTCCCCGTGTCATTGGTGAATGACCGAAGATGGCGAGCGGTAGACTGTTCGGCCGGCTGCTCTTGCAGCAGGCTGGGGTCCGACACTGTTATACAGGAAACAGGAAGCATCTCTACATCACCAAGGACACTAAGGTCATCTGCCAGGGATTCACAGGAAAGCAGgGCACCTTCCACAGTCAGCAGTCTCTGGACTATGGCTCTAGGTTAGTTGGAGGAGTTTCTCCTGGGAAAGGGGGAAAGACCCACCTGGGCCTGCCCGTCTTCAACTCAGTGAAGGAGGCTAAAGCAGGAACGGGAGCAGAGGCCAGCGTGATTTACGTCCCTCCGCCGTTCGCGGCAGCCGCCATCATAGAGGCCATCGACGCAGAGATCCCCCTGGTGGTCTGCATCACGGAGGGCATCCCCCAGCAGGACATGGTGCGCGTCAAACACAGGCTGCTCCGCCAGGGCATCACCCGTCTCATCGGGCCCAACTGCCCCGGCGTCATTAACCCGGGAGAGTGCAAAATCGGGATCATGCCTGGACACATTCACAAGAAGGGGAGAATTGGCATCGTCTCAAGATCAGGCACCCTGACGTATGAAGCTGTGCACCAAACTACACAAGTGGGCCTGGGCCAGTCGCTCTGCATCGGCATCGGCGGAGATCCGTTCAACGGCACCAACTTCATCGACTGCCTGGAGGTGTTCCTGAAGGACCCTAAAACAGAGGGCATCATTCTGATCGGGGAGATCGGAGGCAACGCGGAGGAGAACGCGGCCGACTACCTTAAAGCGCACAACACTGGTGCCAACGCGAAGCCTGTGGTGTCATTCATCGCCGGACTCACGGCTCCCCCTGGCAGGAGGATGGGTCACGCAGGGGCCATCATTGCTGGAGGAAAGGGCGGAGCCAAAGAGAAGATTTCTGCCCTGCAGTCGGCTGGAGTGGTGGTTAGCATGTCCCCAGCACAGCTGGGAAGCACAATGTTTAAGgaGTTTGAGAAGAGGAAGATGCTGTAAGGAAAGCGAGGGCAGCTCACCTCCTGCTACGACGCACAGTGTTTTTTCAGACGTGCTTTCCAGTCTTGTCTCCGTTTCCGCGCACCTCTCCAGAAGAAATCgatagatctctctctctctctttcatcgtTGTCACTCACCACCTCCTTTTTAACACACGAGCAGCACAGTCAGATATCCAGCGGCTCTTATTATCCTGCTGCTGATAAAATAACGCTAATCTCACAGGTGGGTCTAGAGttgacacagtgtgtgtgtgcgtgtgtgtgtgtaaccatCAATGCACCAGCGCgggtttaaagaaaataaaaaatctgtgtgtgtgtttggttcaCTCGCTCCATTATTCAAATGTGGAAATGTATCAAATATAGTTCTCTTGCCTcca

Function

symbol description
suclg1 Predicted to enable succinate-CoA ligase (ADP-forming) activity and succinate-CoA ligase (GDP-forming) activity. Predicted to be involved in tricarboxylic acid cycle. Predicted to be part of succinate-CoA ligase complex (ADP-forming). Predicted to be active in mitochondrion. Is expressed in several structures, including adaxial cell; alar plate midbrain region; digestive system; musculature system; and solid lens vesicle. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome 9. Orthologous to human SUCLG1 (succinate-CoA ligase GDP/ADP-forming subunit alpha).

NR:

description
Succinyl-CoA ligase subunit alpha, mitochondrial precursor, partial

GO: NA

KEGG:

id description
K01899 LSC1; succinyl-CoA synthetase alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681631.1 True 1436 mRNA 0.55 9 509651 540134

Neighbor

gene id symbol gene type direction distance location
LOC103047018 LOC108434388 coding upstream 14229 475671 ~ 495422 (+)
bdh2 bdh2,LOC107746975 coding upstream 34297 463323 ~ 475354 (+)
tacr3 tacr3a,tacr3,LOC108411976,LOC107552719,LOC107746781,LOC107674253,LOC107556806 coding upstream 83137 378228 ~ 426514 (+)
LOC103042564 si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780 coding upstream 168209 332130 ~ 341442 (+)
LOC103032759 NA coding upstream 179814 325636 ~ 329837 (+)
lrrtm1 lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618 coding downstream 607964 1148098 ~ 1153043 (+)
LOC103025599 NA coding downstream 851277 1391411 ~ 1412738 (+)
uchl1 uchl1,LOC107548360,LOC107709457 coding downstream 901316 1441450 ~ 1446518 (+)
LOC103024236 NA coding downstream 907568 1447702 ~ 1517348 (+)
exosc9 exosc9,LOC107656918,LOC107702358,LOC107746036,LOC107591532 coding downstream 978545 1518679 ~ 1527400 (+)
G181821 NA non-coding upstream 8670 492598 ~ 500981 (+)
G181820 NA non-coding upstream 64353 445081 ~ 445298 (+)
G181816 NA non-coding upstream 76084 432539 ~ 433567 (+)
G181811 NA non-coding upstream 176406 332580 ~ 333245 (+)
G181802 NA non-coding upstream 226847 282369 ~ 282804 (+)
G181927 NA non-coding downstream 89773 629907 ~ 663519 (+)
G181934 NA non-coding downstream 135785 675919 ~ 676207 (+)
LOC111195161 NA non-coding downstream 184947 725081 ~ 739466 (+)
LOC103046702 NA non-coding downstream 375125 915259 ~ 993969 (+)
G181955 NA non-coding downstream 378196 918330 ~ 924178 (+)
G181818 NA other upstream 117521 391614 ~ 392130 (+)
LOC111195149 NA other upstream 119485 289010 ~ 390166 (+)
LOC111195150 NA other upstream 203339 300095 ~ 306312 (+)
G181801 NA other upstream 223370 282076 ~ 286281 (+)
G181799 NA other upstream 231478 276671 ~ 278173 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other downstream 1917430 2457564 ~ 2460672 (+)
LOC111195173 NA other downstream 1985549 2525683 ~ 2569294 (+)
G182356 NA other downstream 2716233 3256367 ~ 3258850 (+)
G182361 NA other downstream 2747804 3287938 ~ 3290258 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other downstream 3829783 4369917 ~ 4431946 (+)

Expression


Co-expression Network