ctnna2 (ctnna2)


Basic Information

Item Value
gene id ctnna2
gene name ctnna2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 952999 ~ 1099800 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681632.1
ctctctttttctttctctacagACGGGAAGGAAAGAAAGGGGCGACCCACTAAACACAGCTATCGACAAGATGACCAAGAAGACCCGGGACCTACGCAGACAGCTGAGGAAGGCCGTGATGGATCACATCTCCGACTCCTTCCTCGAGACCAACGTCCCCCTGCTGGTGCTGATCGAAGCAGCCAAGAGCGGCAACGAGAAGGAAGTGAAGGAGTACGCACAGGTGTTCCGCGAGCATGCTAACAAGCTGGTCGAGgTGGCCAATCTCGCGTGCTCCATCTCCAACAACGAGGAAGGAGTGAAGCTGGTGCGCATGGCTGCGACGCAGATAGACAGCCTGTGTCCTCAGGTAATCAACGCCGCCCTGACGCTGGCCGCGCGTCCCCAGAGCAAGGTGGCCCAGGACAACATGGACGTGTTCAAAGACCAGTGGGAGAAGCAGGTGCGCATTCTGACCGAGGCCGTGGACGACATCACCTCCGTCGACGACTTCCTCTCCGTTTCAGAGAACCACATTCTGGAGGATGTGAATAAGTGTGTGATCGCACTGCAGGAGGGTGACGTGGACACTCTGGACAGGACGGCGGGGGCGATCCGCGGCCGGGCGGCACGCGTGGTCCACATCATCAACGCCGAGATGGAAAACTACGAGCCGGGCGTTTACACCGAGAGAGTTTTGGAGTCCATCAAACTGCTCTCTGAAACAGtgATGCCCCGCTTTGCTGAGCAAGTGGAGGTAGCCATTGAAGCTTTGAGCACCAACCCCCCGCAGGCGTTTGAGGAGAACGAGTTTATCGACGCCTCACGCCTGGTCTACGATGGAGTGCGTGACATCAGGAAAGCTGTCCTCATGATTAGGACCCCAGAAGAGCTGGAGGACGACTCCGACTTTGAGCAGGAGGACTACGACACCCGTAGCCGTACCAGCGTCCAGACTGAAGATGATCAGCTCATTGCAGGCCAGAGCGCCAGAgcCATCATGGCTCAGCTTCCTCAGGAGGAGAAGGCCAAGATTGCCGAGCAGGTGGAGAGTTTCCGACAGGAGAAGAGCAAACTGGACGCTGAAGTGGCCAAGTGGGACGACAACGGCAATGACATCATCGTGCTGGCCAAGCAGATGTGCATGATCATGATGGAGATGACCGACTTcaccagGGGAAAAGGCCCACTAAAGAACTCATCTGACGTGATCAACGCAGCCAAGAAGATTGCAGAGGCCGGCTCCAGAATGGACAAACTGGCCCGAGCTGTGGCTGACCAGtgtcCTGATTCAGCCTGCAAGCAGGATCTGCTTGCCTACCTGCAGAGAATCGCCCTCTACTGCCACCAGCTCAACATCTGCAGCAAAGTCAAGGCTGAGGTCCAGAACCTGGGGGGAGAACTCATTGTCTCAGGGCTGGACAGCGCCACatccctcatccaggcagccAAGAACCTGATGAACGCAGTGGTCCTGACGGTCAAGGCTTCCTACGTTGCCTCCACCAAGTACCAGAAAGTTTATGGCACGGCAGCGGTCAACTCGCCCGTGGTTTCTTGGCGCATGAAGGCTCCGGAGAAGAAGCCGCTAGTGAAGAGGGAGAAGCCCGAGGAGTGCCAGACCCGTGTGAGGAGGGGCTCTCAGAAGAAACACATCTCTCCAGTCCAAGCTCTCAGCGAGTTCAAGGCTATGGACTCCTTTTAACTTCAGCGATATTACAAAAGAAGAAGGCCCCTCAAACTCCCCTTCCACTTTAACCCCTTCCCAATGACCCTGACCttaaattttcttttctttctttcttaatgTCCCTCCTCCAATTTGCGGCTCCATGTACCCGAGCCACATTGCCCGGCCAATGTGTGCGTAAGTAAGTTGGAGTGGTGAACTCCTTTCGGTCTCCAGTTTCTTcctccaaaacaaaaaaaaaaacacaaactggaCAAAGGGCGATTGACCGCCAAATGCCAAACCAAGCCAGAGACCCAAGCTCACAAGCTTACAGCTGGGGATATAGTGACTTGTGACTTTTGTTTACTTCCTTTGGTGTTTATCATTAGTTAGCGGTGTTTACTACTGACCAGCCAAATGTATGCGGATATATGACAGAAAATAATACATGGTGCGGTAGTAATCGGCCCGTAGCTGTGCAAAGAAGGGAGCATTGGAGCTCCTAACGTAAGCGTTTGGTTTGCAACTGAATATATGACTGGTAGTGCTAGGACTTAAGTTATGTTGAGACACTTATTTACTTTGACCCTTGATGATGaatatgatgataatgatgatccATATAATCCACATTATGGTGATGAGCAACACTaggtcttcttttttttttttgccatttcttaAATTCTTCTATTACTGCATCACTAACTATACTGCAGCCTGGTTGGTTGACCCGTAGTGTTGAACATACTACTAGAAATCGGACTGAATCGACTAGTTGTGTGGTTTGCTCAGAGAATACGTAGAAACCCTGCATACCTTTATATAGTCACAATTCTCTAATAAACCCTGCAACTGTGTGCTCAGA

Function

symbol description
ctnna2 Predicted to enable several functions, including actin filament binding activity; beta-catenin binding activity; and cadherin binding activity. Predicted to be involved in several processes, including brain morphogenesis; neuron projection morphogenesis; and regulation of synapse structural plasticity. Predicted to act upstream of or within actin filament organization; cell differentiation; and epithelial cell-cell adhesion. Predicted to be located in adherens junction; axon; and cytoplasm. Is expressed in female organism. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations. Orthologous to human CTNNA2 (catenin alpha 2).

NR:

description
PREDICTED: catenin alpha-2 isoform X1

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0045296 cadherin binding molecular_function

KEGG:

id description
K05691 CTNNA; catenin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681632.1 True 2519 mRNA 0.52 11 952999 1099800

Neighbor

gene id symbol gene type direction distance location
LOC111195168 NA coding downstream 682639 264960 ~ 270360 (-)
rps6kb2 rps6kb2,LOC108413157,LOC108260512,LOC103368287 coding downstream 721870 207651 ~ 231129 (-)
LOC103027497 LOC108413410 coding downstream 753020 191958 ~ 199979 (-)
LOC103030885 LOC107692594,LOC107702307 coding downstream 762258 109764 ~ 190741 (-)
LOC111195164 NA coding downstream 917486 28644 ~ 35513 (-)
LOC103026423 ppp2r2ca,LOC103026423,LOC107692591,LOC107563918,LOC107742501,LOC108413194,LOC107562984 coding upstream 279693 1379493 ~ 1390551 (-)
LOC103024763 LOC108434311,LOC108434344 coding upstream 314269 1414069 ~ 1421243 (-)
LOC103025290 LOC108434344,LOC108434311 coding upstream 323239 1423039 ~ 1438417 (-)
trnai-aau_12 NA coding upstream 428226 1528026 ~ 1528099 (-)
LOC103028260 tusc3,LOC108413602 coding upstream 1466563 2566363 ~ 2661226 (-)
G182038 NA non-coding downstream 28912 918281 ~ 924087 (-)
G181930 NA non-coding downstream 289765 629918 ~ 663234 (-)
G181932 NA non-coding downstream 294871 657666 ~ 658128 (-)
G181923 NA non-coding downstream 387640 565107 ~ 565359 (-)
G181921 NA non-coding downstream 388078 558940 ~ 564921 (-)
G182096 NA non-coding upstream 117815 1217615 ~ 1239567 (-)
G182115 NA non-coding upstream 159686 1259486 ~ 1260331 (-)
G182144 NA non-coding upstream 231192 1330992 ~ 1375077 (-)
G182158 LOC108413195 non-coding upstream 266610 1366410 ~ 1373731 (-)
G182137 NA non-coding upstream 277177 1376977 ~ 1378219 (-)
cisd2 cisd2 other downstream 444935 494190 ~ 508064 (-)
LOC103026712 NA other downstream 904705 45736 ~ 48294 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other upstream 485695 1585495 ~ 1712137 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other upstream 2295319 3395119 ~ 3454586 (-)
G182501 NA other upstream 2447833 3547633 ~ 3550413 (-)
LOC103027068 NA other upstream 4007236 5107036 ~ 5109098 (-)
G182810 saraf other upstream 4077576 5177376 ~ 5213151 (-)

Expression


Co-expression Network