LOC111195171


Basic Information

Item Value
gene id LOC111195171
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 1579243 ~ 1582834 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681658.1
TTAATCTGCAGGCTGCAGTTTTAGGAGTGCTTGGACTTGCCCTTACCTTATATGTAATGTAAGATGATCTGAATGTAAACTCGACTCctgtcattttctttttcattttttcttttttttacgaCGTGACGTGGGTTCCTGGTGTCTGCTTACATAAGACATAATAAGCCTTGCTCCTGGTCTACAACTTGTGCTTCCGAATCTACAGCTTTTCAAGACACTAAATCTATGGATGAGATTTCTGCAGAACCTCAAATTAACACTCGGGACAGAGTTCAGCTGTAACTAAAgtttaaagatGGTGAGAAGAACACTCCTTGGCTTTTTCTCACTTATTCTGGTCTTGGCCTCCAGTGCTGCCACCATCAAGACCCTGAAAGAGATTAAGGACTTGAAGAAAACCAGAAACCTTGTCAAAGAATTCCCACGGCATGGTCTCATGCTTCTGCACTGGTTTGCCAACAGTGTAAGGTTGATGAAAAGGGAGTGATTCAACTGAACTACGATCCAGGACAAGGCATCTACGGATCACGCTGCTACCGAAGTGTGATGCCTCCTCAAGTTGTTGAAAAAAGACGTCTGTCTCCGCCTGAAAGTTGGTTTTACTCCTTGGGCGATCTCAGTCATGAAGGTTCTCGAATGTTGCCGTCTTATGTAACACAGGACTTCCACAACTCAATGGGATCTCAACACGAGAACGTGGACAGATTGCTGATTGAAGTCCAGAAAAACAGTCCTCAGAAAGTGGATAAATTGTATATAACTCAGCACTTTGAGGGCAAAAACCGAAGAGTTGATCTAAACAACACCTATGAGATCAGTTCTAAACTTCTGATACAAATCCAAGCCCTTTCAAAGAACATTGCCTGCAATGCAAATGATCCTAGGCTCGACTTTAGCCCATGCAGGATCTTGGATCACCAGCAAAAAGCTGCAAAAGTGGAGATGGTGTATCCAAAAACACCAGGACTTGCATGGTTTCTGAGTCTTGCTGGTTACAACGTTGATCAAAGGTTTTTAGTGTTTCTCTGCTCAACTAACCCAGCAAACGACTCCAGTGGTAAATGTTATCCACTTTCAGTAAATGACCCTGAAACCCAATGCCAAGTTCACTACAAGATCAAGCTAGAGGTGAAGTCCACTTCAACGGGGTACGCAAAGATCCTGTGGAGTGGAATCCCAGAAAGCATCGCAAGAATGGAGGtgaatattggtctttacaaaGATGGAACCAAAGAAGAACCTTTGGAAGAGTATCCATTGAGTGGAAGAACCTTTGGAACCATAGACACTAACATTCCCCTAAACCCCGGCCATCAAGTGCATCTTCTAAGACGTGAACAGACTCCGTACTACCTTGTTTTCAGCGCCACGCACTACTCAAGCATCTGGAAAGGTCCGGAGTTTGACGAAGCCAACTGGGTTCATCCAACTAGGGTCAGAGGCTATGATATGAGTCTCCAGCTTTATACCAAACATGGTTATGCATGTGCTCGCCTCTACGTTAAGAAGACGTTCACTAATTGGAAAAACGTCTTCGACAACTCATGGGTGGGATTCTATGCAAGCTATTTAGACGATAATGATGCTTATAGCAAGTATGAGTGGGTGGTGAACTTTGAGAAGAGGCCAGAAAAAGGCTGTCCTTTGGATTACGACGTCTATGAGGCTGAGTCGGGCCTAGCGATTGGTCCTGGAGTTCAGGCTCGACTCATGCTGACGAAGCATATCGGAAGTGAGAAAGCTCGCACCGTTTCCTGGGAAGAAAGTTCGACCATAAACCAGTAGCTACATATACGTTTAAGGACTCGTTAACCACTCGTTTCTTGGGTTTTCCAGGCAGGTTATCCAGTTTATCCAGGGTTCTTTTTAGACGATTTTACACCTGCACTTTTTAATCTGGTTTAATTGGACCCTGATTTGGTTTTCACACTTTGTGAGATTCAGTACAGACCAAAACAAGTCCTATTCTGTTAGCAGTACTTCCTTACTTAGTGGACTTAgtgcatttattatatttattagaaggaatgtccacaaaatatcaaacatactGGGTTAGTTCCCAAGAAAAGGATTAAACCTAGTATTGAACTGTACGGCATTTTGAATAGAGAGTAACTCAAACTTGACTCAAAATTATTTGAATTCATATCATATCTCAATATTAAGTGTTATTTTATGTTCTAATTGATTTTTTATTGCGTTTGGTTTGTTAGTTTTGAATTGTCTgatgattttttaaagaaattatcaGGTTTTAGTCAACTATGGAGATACAGTGCCTTAAATAGCCCCATCTCCCATTCACAAATGTGTTATcagtgggaaaaaaaactatgtatgtatgtaaatgctatatatttacaatagtAGTAGTTTTGTTAATGAAAATATGTTTAAGCATAAATTGTTGTATTACTGcttatgtttgcagtttatatgcatgcaataAATATTGTACAGTTTATTACTGTGgtagatttttaaaattacatcatttattttgttacaacgatattattttacataaaatcagACTCTTGGTGACTTTTtacaagatatatatatatttttttagtttttactgaat

Function

GO:

id name namespace
GO:0006793 phosphorus metabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0016310 phosphorylation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681658.1 True 2593 mRNA 0.40 2 1579243 1582834

Neighbor

gene id symbol gene type direction distance location
LOC103022979 NA coding upstream 4187 1571942 ~ 1575056 (+)
LOC111195172 NA coding upstream 8572 1566940 ~ 1570671 (+)
LOC103023290 ptpn9b,LOC108434348,LOC107746013,LOC107702357,LOC107591531,LOC107754144,LOC107551593 coding upstream 34882 1529116 ~ 1544361 (+)
exosc9 exosc9,LOC107656918,LOC107702358,LOC107746036,LOC107591532 coding upstream 51843 1518679 ~ 1527400 (+)
LOC103024236 NA coding upstream 61895 1447702 ~ 1517348 (+)
frg1 frg1,LOC107721419,LOC107702291 coding downstream 530949 2113783 ~ 2122581 (+)
LOC103030587 sgcz,LOC107656592,LOC107702328 coding downstream 1086089 2668923 ~ 2935391 (+)
LOC103022435 LOC108441326 coding downstream 1428837 3011671 ~ 3147270 (+)
LOC103043954 LOC108413760 coding downstream 1594798 3177632 ~ 3266112 (+)
LOC103042722 pdli3,LOC103042722,LOC108415769 coding downstream 1692052 3274886 ~ 3284974 (+)
G182006 NA non-coding upstream 23397 1555601 ~ 1555846 (+)
LOC111195170 NA non-coding upstream 24461 1547201 ~ 1554782 (+)
G181982 NA non-coding upstream 201024 1375197 ~ 1378219 (+)
LOC103046702 NA non-coding upstream 585274 915259 ~ 993969 (+)
G182012 NA non-coding downstream 7120 1589954 ~ 1592276 (+)
G182016 LOC108441695 non-coding downstream 12943 1595777 ~ 1596627 (+)
G182226 NA non-coding downstream 153924 1736758 ~ 1737124 (+)
G182229 NA non-coding downstream 178022 1760856 ~ 1761176 (+)
G182232 NA non-coding downstream 241011 1823845 ~ 1824066 (+)
G181818 NA other upstream 1187113 391614 ~ 392130 (+)
LOC111195149 NA other upstream 1189077 289010 ~ 390166 (+)
LOC111195150 NA other upstream 1272931 300095 ~ 306312 (+)
G181801 NA other upstream 1292962 282076 ~ 286281 (+)
G181799 NA other upstream 1301070 276671 ~ 278173 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other downstream 874730 2457564 ~ 2460672 (+)
LOC111195173 NA other downstream 942849 2525683 ~ 2569294 (+)
G182356 NA other downstream 1673533 3256367 ~ 3258850 (+)
G182361 NA other downstream 1705104 3287938 ~ 3290258 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other downstream 2787083 4369917 ~ 4431946 (+)

Expression


Co-expression Network