pcdh18 (LOC108413018)


Basic Information

Item Value
gene id pcdh18
gene name LOC108413018
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 3815403 ~ 3827765 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681680.1
TCGCGCTTCATTTGGGGAGATTTTGGCTGGCTGGGTGGAGCGAGCAGCCTCATTCTGGATTACACATTCGCACACGCGCTTGCTCGCTcgcgcacgcacacactcatGCATGCATGCGCTTATTATGCATGCGCGCACAACAAGACCCTCAGTCTGCTCACCGCACGCGCGCAacagggtctctctctctctcgctttcttgctttctcgctttctctctctctccagcggGATGCAATGTCTCTTGACTGTGCACGAGATGCGTAGTGTCCCCGGGTACGCGCGCGCGTGACAAGGCACAAGGACGGGAGGTACGCACGAAAGGAGGGCACGAGGACACTTTCCTCCGTTTTCTATCCATCCGTGAGAGCGCGCGCGCgccacagacacaaacacagacatagagagagatacTATACTCACGCGCTCACCATGTCCAGCAGCAGAGGTGCGCACGCTTTGCTCGCTCACGCGCTGCTCGCCCTCTTCGCCACCCTGGCCGTGCGCGTGACGGCGGGCTCCACCGTGAGGTACCGCGTGCCCGAGGAGCTCCCCGTGGGCTCGGTGATCGGGCGCCTCGCGGACGACGCCGCCGAAGATCTCGCGCGCCTGCCCGGCTCGGTGTCTCCGCGTTTCCGCGCCGTCACGCGCCGCGGAGCCCCTGCGTCCTCCGCGCTTTCGGTGCGCGAGCGCGATGGCGAGATCAGCGTGCGCGCGCGGCTGGACCGCGAGACGCTGTGCTCCGGAGGACTGATGGAGGCGAACTGCACGCTGGAGTTCGACGTGCTTACGCTGCCCACGGAGCACCTGCAGCTGTTCCACGTCGTGGTGGAGCTGCTGGACGTCAATGACCACGCCCCACGCTTTGCTCGGCCCATGGTACCTGTGGAAATCTCAGAATCAGCAGCTGTGGGTACCCGGGTGCCTCTGGACAGTGCCACGGATCTAGACACTGGAGAAAATGGCCTGCACTCATACTCCTTGGCATCTTCCAAAACCTTTGGCATTGATGTTCTCACAAGACCCAATGGTGCCAAGTATGCCGAGCTGGTAGTGTTGGCACCACTTGACCGAGAGGAACGTTCTAGTTATGAACTTGAGCTCACCGCAACTGATGGTGGTGACCCACCAAGGACAGGCACCACGATGCTTAGGATCACTGTTGCCGACTCCAATGACAACAGTCCGACATTCGAAAAATCATCATACGTGGTCACCCTGGCAGAAGATGCACCACTAGGCATGCTGATCGTAGACCTGAATGCCACGGACCCAGACGAAGGAACCAATGGAAAGATCGTCTACTCGTTTGGTGCCCATGTGTCACCCAAGGTTCTGGAGACTTTCAGGATTGACCCGGATGACGGCCGACTTACTCTGCTGCGCAAAGTGGACTTTGAGATGACTGATTCCTACGATATCGATGTGCAGGCACAGGACATGGGGCCCAACTCCATGCCGGCGCACTGCAAGGTGACGGTCAAGGTGCGGGATGTGAACGACAACAAACCGGATGTTACTGTGAGTTTGATGACACCGAGCGATGAGGATGCAGCATTCGTATCTGAAACGGCACCGACGGACACTTTCGTGGCATTAGTAAGAGTGGACGATGCAGATTCTGGGCTAAACGGTGAAGTCGTGTGCCGCCTGCTAGGCCAGGGGCATTTCCGACTGCAGAAAACACACGAGAAAAACTATATGATACTGACCAATGCCAGCCTGGACAGAGAGAAAAGGTCAGAATACAGTCTGACTGTTATCGCTGAGGACCGTGGAACACCCAGTATGTCCACAGTCAAGCATTTTACGGTGCAGGTGCAGGACGAGAATGACAATGCTCCAAGTTTTGACAAGAGCAGGTATGAAATTTTCAAAGCTGAGAACAACTCGCCCGGTGCTTACCTGGCCACTCTGCAGGCGTCCGACCCTGACCTTGGTGCTAATGGCCAGGTGAGCTACTCTATTTTGGAAAGCTTGGTCCAGGGCAGCTCGATCTCAACATATGTGACCGTAGACCCGTCCACTGGTGCGCTCTATGCCTTGCGTACTTTTGACCGGGAGGAACTCAGCCAAATCTACTTCTTGGTTCAGGCCAAAGACTCCGGTAACCCTTCGCTGAGCAGCAACGTTTCTGTAATCTTGAACGTCTTAGATGAGAATGACAATCGGCCAGTCATCTTGGCACCACCTTTGTGGAATCACTCTGCTGAAGTCCCGGTGTCCAGGCGTGCAGAAGCTGGTGAGCTGGTTTCTGCAATCAGGGTGACAGATCGGGACACTGGTGCCAACGGTGACGTTTCTTGCCATGTGATTGGAGGCAATGAGGCAGGATACTTCTCTATGGACAGTAGGAGCTGTGAGATTTACACAAACACTAGCATGAGGGAAGTTCCGGTGGACCGAGTGGACATGACCGTTCTGGTGCAGGACCACGGATCCGAACCGCTGGGAACCAAGGCCCTGCTGAGGCTGACACTGTATGAGAACCTGGAGAACCTGGCTGATCATCACCAGACATCCTACCAGCCAGGCAGCGGAAGTGGAGGAGAGAACGTCCCAGATGTTTCCACCATAATCATCATCTCTCTGGGTGCGGTGTGCGGTCTACTGCTGATCATCATGGTGGCGTTTGCCCTGCGGTGTTCCCGCGACAAGAAGGACACGCACTCGTACAACTGCAGAGTGGCCGAGTCCACCTACCAGCAGCACCCAAGGAAACCATCCCGCCAAATTCACAAAGGAGAAATCACCCTGGTGCCCACGGTCAATGGCACCCTGCCTCTTAGGGCGCATCACCATGGCGGCTCGCCCGGGACCTCACCCGGCCAGCAGAGGGCACACATGAGCAGCCGGCAGAGCCACCACAGCCACCAGTCCCTCAACAGCCTTGTAACCATCTCATCCAATCACATTCCTGAAAGCTTCGCCCTGGAACTTACACATGCCACGCCCCCTGTGGAGCAAGTTTCACAGCTGCTCTCCCTACTCCATCAGGGTCAGTATCAGCCTCGGCCCAGCTTCAGAGGAAACAAATACACTCGCAGCTACAggtacgCCCTCCAAGACATGGATAAGTTCAGTCTGAAGGATAGTGGGCGGGGCGACAGTGATGCGGGCGACAGCGACTGCGAGACGGGCCGTGATTCGCCAATGGACCGGTTGCTAGGCGACGGCTTCGGGGAGCTTTTCCACATCGACGGACAAAACAGGCTCCACCCAGCGATGAAGCTGTGCACGGAGGAGTGTCGCGTGCTGGGTCACTCCGATCAATGCTGGATGCCGTCCATGTCCTCCACCGATTACCGCAACAACATGTTCATCCCCGGCGAGGAGAGCCGGCCGCAGCTGCTGGAGGACGACCAGCGCTCGCTCGACTCCAACCGCAAGAGCTTCTCCACCTTCGGCAAGGAGGcgcaggaggaggaggcggaggacGGCGCCGGGAGCTCGCTGCTCTCCGAGATGAACACCGTCTTCCAGCGGCTCCTCCCCCCGACCTACACCGAGCTCTCCGAAGACTCCGCCCCTCCCACGGCCACCGCCGAGACCAGGAGGTGCCTGCTGCCGGGGAAGGCGGGGCCGGCGACCTCCAGCCCCGTCTACCAGCAAGGAGTAGCGGCCTGGGCGGCCAACACGCACTTCCAGAATCCCGGCGGGGTCGCCTCGGCCGGCGCGCCGCCGCCGCACGGCGTCACCAATCACGCGTCGGCCCAGACGCACCTGAAGTGGCTGCCGGCCATGGAGGAGATCCCGGAGAACTACGAGGAGGACGAGATGGACAAGCGTAACGAGGCCGTAGGCGAGCTGGCCGCCGAAATTAGCAAACTGCTGCAGGAGGTGCGTCAGAACTGAAGAGCGAgaaccaaaactaaaaaaaaaaaagaaaatcaataaaaaagacCATCAGAGATAACGAACTGCTGAAGACCTCCCTCCAATAACCACGGGTTTAGTCAGCCAACGTAAACTCCAAAACTCTAGAACTCTAGAACTCAAGAACTTCAGAAATATCAACACATGTCTAGTACCTACCACAAACCTCCAAATATCCTTCTTTTCTAGCTCTAAAGCTACGAAGCTAATGGGGCTAACAGGTGATGGAAGCTTATAACTTATAGCGTATAGTCGATTTTAGCATAGCATGGTGCTAACCGCAGGCTAACCGCAGGCTAACGAGATCATGGCCATGATACACTCGCCTTAAAACATGCCGAGATCTTCGGAAGTCTCTAAATCTCTATtgctgtagattttttttttggtctaaaaATGTCTGACTAGCATTATAAACTAGTGCAAAtctcattgaaaagttattttcttttcagattcaaaatgtgaaactcacacacacatagtgatttattttaagccttta

Function

NR:

description
PREDICTED: protocadherin-18-like isoform X2

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16499 PCDHD2; protocadherin delta 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681680.1 True 4381 mRNA 0.56 7 3815403 3827765

Neighbor

gene id symbol gene type direction distance location
LOC103037959 NA coding upstream 264878 3536363 ~ 3550525 (+)
LOC103037633 NA coding upstream 280351 3524196 ~ 3535052 (+)
LOC103038692 acsl1,acsl1a,LOC107562746,LOC107702334 coding upstream 378359 3399191 ~ 3437044 (+)
LOC103039527 NA coding upstream 434860 3344537 ~ 3380543 (+)
cfap97 NA coding upstream 478564 3323761 ~ 3336839 (+)
sclt1 sclt1 coding downstream 568050 4395815 ~ 4423038 (+)
LOC103036009 NA coding downstream 646968 4474733 ~ 4479749 (+)
LOC103036626 LOC108414886,LOC108414926,LOC108414927 coding downstream 670272 4498037 ~ 4506712 (+)
LOC103029042 chic2,LOC103029042,LOC108441324,LOC103353160,LOC101486940,LOC106602128 coding downstream 1114656 4942421 ~ 4948100 (+)
LOC103030219 tsn5,tspan5b,LOC108441323,LOC107557938,LOC107692617,LOC107758863,LOC105893813,LOC103360687 coding downstream 1143339 4971104 ~ 4981396 (+)
G182511 NA non-coding upstream 100583 3714609 ~ 3714820 (+)
G182510 NA non-coding upstream 148906 3666219 ~ 3666497 (+)
G182509 NA non-coding upstream 149300 3665861 ~ 3666103 (+)
G182507 NA non-coding upstream 154911 3660229 ~ 3660492 (+)
G182492 NA non-coding upstream 288430 3526280 ~ 3526973 (+)
G182530 NA non-coding downstream 82138 3909903 ~ 3917616 (+)
G182566 NA non-coding downstream 330595 4158360 ~ 4158802 (+)
G182592 NA non-coding downstream 548616 4376381 ~ 4392378 (+)
G182591 NA non-coding downstream 608788 4436553 ~ 4437168 (+)
G182597 hgsnat,LOC108411545,LOC107656620,LOC107565475 non-coding downstream 610219 4437984 ~ 4442647 (+)
G182361 NA other upstream 525145 3287938 ~ 3290258 (+)
G182356 NA other upstream 556553 3256367 ~ 3258850 (+)
LOC111195173 NA other upstream 1246109 2525683 ~ 2569294 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other upstream 1354731 2457564 ~ 2460672 (+)
G181818 NA other upstream 3423273 391614 ~ 392130 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other downstream 542152 4369917 ~ 4431946 (+)
LOC103029349 NA other downstream 1107818 4935583 ~ 4941134 (+)
G182790 NA other downstream 1599102 5426867 ~ 5427255 (+)
G183001 pgm2 other downstream 2214923 6042688 ~ 6048474 (+)
pax5 pax5 other downstream 2423009 6250774 ~ 6367190 (+)

Expression


Co-expression Network