LOC103036009



Basic Information


Item Value
gene id LOC103036009
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4474733 ~ 4479749 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_022681687.1
ATAGTCTTCCTTGGGTTTTTGCCaagacagagagacataaaTAGGCTCCACTCTCTCCAGCAGGACACTCATCCGGATCAAGAAACAGCACTACAGCACAGCAGacagTTCTCAAAACATGTCGTCTCTACTGGCGTTTGAATTTCTGCTGATGTGCCTGTCAGCGGAAATGCTTTCCTGTGAATCAGCTGACGTCACGCCTACATATGTGGCTCGAAGCTGCAAAGAAATTCGAGATAAgtaccagaaaaaaacagATGGTCTGTACTACCTGACAACGGAGAGTGGGGTGGTCTACCAGACCTACTGTGATATGACCACTGCTGGAGGCGGCTGGACGCTGGTGGCCAGTGTGCACGAGAACAACATGTATGGGAAGTGCACTGTAGGTGACCGCTGGTCCAGCCAGCAAGGCAATGACATTAATAGGCCTGAAGGAGACGGAACCTGGGCTAATCGGGTTACATTTGGAACTCCTGAAGGTGCCACCAGTGACGACTACAAGAATCCTGGGTATTACGACATCAAGGCTCAGGATGTGTCTGTGTGGCACGTTCCCAATAACGCCGAGACGCAGCAATGGAGGTACAATTCCATCTTACGCTACCACACTGAAAACCACTTTCTCGACAACAACGGAGGAAACCTCTATAGCTTATTCAAGAAATACCCAGTGAAGTACGGACTTGGAGTTTGCCGTACTAATAATGGACCTTCTGCACCGGTGGTGTACGATTTGGGAAATAAAGTTACCAACAAGTTCTTGTATGGTCCCAACCCAAGAGGAGAGTTTGAGCCTGGATTCATCGCTTTCAGAGTTTTCAACAACGAGAGGGCGGCCATGGCCATCTGCTCTGGAGTCAGACCGACCGGCTGCAATACAGAACATTACTGTATTGGGGGAGGAGGGCATTTCCCGGAAGCGGCACCGAGACAGTGTGGAGATTTTCCCAGTTTTGACTGGAGCGGCTACGGGACTAACACAGAATGGAGCGCCTCCAAAGAGATCACTGAAGCTGCTGTGTTTCTGTTCTACCGCTGAGATCCAGATCACTTCAGACAACTTCAGCTCTATcattctctatctttctttatcTATCCTTTATTATACAGATTATATAGTAAAATCGTTTCTTAATAGGTGATGGTAACTCTTATGTAAAATTATAGATATTACAACATTGACATTATAAAACTGATTAGAAGCAGGCTCCAAATacatgttagctacattagcctcataacAACAGTACTAATTAGTGAATTATAAACTCCAAATatatgttagctacattagcctcataacAACAGTGCTAATTAGTGAATTATAAGCTCCAAATacatgttagctacattagcttcataACAACAGTACTAATTAGTGAATTATAAACTCCAAATATATGTTAGCTACATATTAGCCCC

Function


GO: NA

KEGG:

id description
K17527 ITLN; intelectin

RNA


RNA id representative length rna type GC content exon number start site end site
XM_022681687.1 True 1425 mRNA 0.44 8 4474733 4479749

Neighbor


gene id symbol gene type direction distance location
sclt1 sclt1 coding upstream 51695 4395815 ~ 4423038 (+)
pcdh18 LOC108413018 coding upstream 646968 3815403 ~ 3827765 (+)
LOC103037959 NA coding upstream 924208 3536363 ~ 3550525 (+)
LOC103037633 NA coding upstream 939681 3524196 ~ 3535052 (+)
LOC103038692 acsl1,acsl1a,LOC107562746,LOC107702334 coding upstream 1037689 3399191 ~ 3437044 (+)
LOC103036626 LOC108414886,LOC108414926,LOC108414927 coding downstream 18288 4498037 ~ 4506712 (+)
LOC103029042 chic2,LOC103029042,LOC108441324,LOC103353160,LOC101486940,LOC106602128 coding downstream 462672 4942421 ~ 4948100 (+)
LOC103030219 tsn5,tspan5b,LOC108441323,LOC107557938,LOC107692617,LOC107758863,LOC105893813,LOC103360687 coding downstream 491355 4971104 ~ 4981396 (+)
LOC103028516 slc24a2,LOC103028516,LOC108441320,LOC108260852,LOC107665969 coding downstream 516028 4995777 ~ 5031681 (+)
LOC103028729 LOC108415759 coding downstream 600649 5080398 ~ 5105339 (+)
G182600 hgsnat,LOC108411545 non-coding upstream 21701 4448681 ~ 4453032 (+)
G182597 hgsnat,LOC108411545,LOC107656620,LOC107565475 non-coding upstream 32086 4437984 ~ 4442647 (+)
G182591 NA non-coding upstream 37565 4436553 ~ 4437168 (+)
G182592 NA non-coding upstream 82355 4376381 ~ 4392378 (+)
G182566 NA non-coding upstream 315931 4158360 ~ 4158802 (+)
G182606 NA non-coding downstream 34004 4513753 ~ 4514215 (+)
G182607 NA non-coding downstream 34538 4514287 ~ 4514859 (+)
G182673 NA non-coding downstream 370838 4850587 ~ 4851443 (+)
G182674 NA non-coding downstream 371754 4851503 ~ 4852061 (+)
G182690 NA non-coding downstream 405987 4885736 ~ 4889343 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other upstream 42787 4369917 ~ 4431946 (+)
G182361 NA other upstream 1184475 3287938 ~ 3290258 (+)
G182356 NA other upstream 1215883 3256367 ~ 3258850 (+)
LOC111195173 NA other upstream 1905439 2525683 ~ 2569294 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other upstream 2014061 2457564 ~ 2460672 (+)
LOC103029349 NA other downstream 455834 4935583 ~ 4941134 (+)
G182790 NA other downstream 947118 5426867 ~ 5427255 (+)
G183001 pgm2 other downstream 1562939 6042688 ~ 6048474 (+)
pax5 pax5 other downstream 1771025 6250774 ~ 6367190 (+)
rnf38 rnf38,LOC107551561 other downstream 1965514 6445263 ~ 6498192 (+)

Expression



Co-expression Network