nans (nansa,nans,LOC107723182,LOC107692601,LOC107758866,LOC107665955)


Basic Information

Item Value
gene id nans
gene name nansa,nans,LOC107723182,LOC107692601,LOC107758866,LOC107665955
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 5336603 ~ 5346435 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681718.1
attatgaagtgtGTGGGCGGGGCCGGGCCGGCGGCTGTTCCTGGCTGTAGGCTGGTGTGGAGCTGAGTGGTGGAGGACTGAgagcagtagcagcagtagcagtaaATATAATACCATATATTATAAATCCGGGTTTAATATCGGGTTTATCGGCGAGAATGCCTCTAAAATTCGAGTTATGTCCGGGCCGGATGATCGGGGGGAACCACCCCTGCTTTATCATCGCTGAAATCGGACAGAACCACCAGGGAGATCTGGACACAGCCAAGAAAATGATCCGGATGGCCAAAgactGCGGGGCAGACTGCGCTAAATTCCAGAAGAGTGAGCTGGAGCACAAGTTTAACCGCCGCGCTCTGGAGAGACCCTACACATCCAAGCACTCCTGGGGGAAGACATACGGAGAGCACAAGCGCCACCTGGAGTTCAGTCATGAGCAGTACAAGGAGCTACAGAAATACGCTGCTGAGGTTGGAATCTTCTTCACCGCCTCAGGCATGGATGAGATGGCTGTAGAGTTCCTCCATGAACTTGACGTCCCTTTCTTCAAAGTCGGCTCCGGTGACACCAACAACTTCCCCTATCTGGAGAAAACGGCTCAGAAAGGTCGGCCCATGGTGGTCTCCAGTGGGATGCAGTCGATGGAGACGATGCGGCGAGTCTATCAGACGGTGAAGAAACACAACCAGAACTTCTGTATCCTGCAGTGTACGAGTGCGTACCCTCTGGAGGCCGAGGACGTTAACCTGCGTGTCATCACAGAATACCAGAAGGAGTTCCCGGACATTCCCATTGGCTACTCCGGTCACGAGTCGGGCATCAGCATCACGGTGGCTGCAGTGGCTCTGGGGGCCAAGGTGGTGGAGCGCCACGTGACCCTGGATAAAAGCTGGAAGGGCAGCGACCACGCGGCGTCGCTGGAGCCCGGAGAGCTGGCCGAGCTGGTGAAGGCCATCCGGACCGTGGAGAGAGCGCTGGGCAGCGGGGTTAAACACATGCTGCCCTGCGAGGTGCCCTGCCATGACAAGCTGGGTAAGTCCGTAGTGGCTAAATCAGCGATTTCTAAAGGAACCGAGTTGACCCTGGACCTGCTGACGGTGAAGGTGGCCGAACCCAAGGGTGTGGCTCCAGAGGACATTTTCCAGCTGGTGGGGAAGAAAGTGCTGGTGGACATCGGGGAGGACGAGAGCGTCACCGAGGACGCGGTCGAGAGTTACGGCAAAAAAGCCAAAGTGTGATGGAGCTCAGAATCTGCTGACAGCCAGCACGAGATCTGCTGTTATCAGCTACAGCGGGGCAGCGGCAACCTCAGTGCTGGAACTCTGGACCAGCGTGGAATCTCCAGAACGCTGCAGATGCTGTTGGTATCAAATGGAGCCCAAAATGTGAAACGTCCTTTCACTTATTCTGTATTGGACAGGTTTGATTTTGGGCTTAAGTTACTGAGAAAATGTTACtgttttgtgaagaatcaaagCACTTTGCCAAACTCTAAATAAACTGCGAGTTAATAACCACAA

Function

symbol description
nansa Predicted to enable N-acylneuraminate-9-phosphate synthase activity. Acts upstream of or within embryonic skeletal system development. Predicted to be located in extracellular region. Is expressed in several structures, including alar plate midbrain region; axis; digestive system; hatching gland; and polster. Human ortholog(s) of this gene implicated in spondyloepimetaphyseal dysplasia, Genevieve-type. Orthologous to human NANS (N-acetylneuraminate synthase).
nans Predicted to enable N-acylneuraminate-9-phosphate synthase activity. Predicted to be involved in glycosylation. Located in extracellular exosome. Implicated in spondyloepimetaphyseal dysplasia, Genevieve-type.

NR:

description
PREDICTED: sialic acid synthase-like isoform X1

GO:

id name namespace
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0008781 N-acylneuraminate cytidylyltransferase activity molecular_function
GO:0047444 N-acylneuraminate-9-phosphate synthase activity molecular_function
GO:0050462 N-acetylneuraminate synthase activity molecular_function

KEGG:

id description
K05304 NANS, SAS; sialic acid synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681718.1 True 1520 mRNA 0.54 6 5336603 5346435

Neighbor

gene id symbol gene type direction distance location
gne gne,LOC107723184,LOC107692604 coding upstream 4152 5301005 ~ 5332451 (+)
tmod1 tmod1,LOC107665961 coding upstream 58882 5252691 ~ 5277721 (+)
tdrd7 NA coding upstream 85687 5230780 ~ 5250916 (+)
LOC103023997 LOC108443450 coding upstream 107007 5214910 ~ 5229596 (+)
trnai-aau_14 NA coding upstream 130444 5206086 ~ 5206159 (+)
clta clta,LOC107723183 coding downstream 2132 5348567 ~ 5363211 (+)
LOC111195186 NA coding downstream 21081 5367516 ~ 5376064 (+)
LOC111195187 cyp4v8,LOC108415372,LOC107656409,LOC107754133,LOC107562739,LOC106602559 coding downstream 52444 5398879 ~ 5414981 (+)
LOC111195263 LOC108425226 coding downstream 371605 5718040 ~ 5720468 (+)
trnap-agg_6 NA coding downstream 498996 5845431 ~ 5845502 (+)
G182730 NA non-coding upstream 298995 5036210 ~ 5037608 (+)
G182703 NA non-coding upstream 366925 4967011 ~ 4969678 (+)
G182690 NA non-coding upstream 447260 4885736 ~ 4889343 (+)
G182674 NA non-coding upstream 484542 4851503 ~ 4852061 (+)
G182673 NA non-coding upstream 485160 4850587 ~ 4851443 (+)
G182791 NA non-coding downstream 80914 5427349 ~ 5427850 (+)
G182907 NA non-coding downstream 147407 5493842 ~ 5498366 (+)
G182911 NA non-coding downstream 196991 5543426 ~ 5559507 (+)
G182941 LOC107741621,LOC107559181,LOC107564376,LOC107559180,LOC108414272,LOC108414004 non-coding downstream 363217 5709652 ~ 5710340 (+)
LOC111195191 NA non-coding downstream 514430 5860865 ~ 5873196 (+)
LOC103029349 NA other upstream 395469 4935583 ~ 4941134 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other upstream 904657 4369917 ~ 4431946 (+)
G182361 NA other upstream 2046345 3287938 ~ 3290258 (+)
G182356 NA other upstream 2077753 3256367 ~ 3258850 (+)
LOC111195173 NA other upstream 2767309 2525683 ~ 2569294 (+)
G182790 NA other downstream 80432 5426867 ~ 5427255 (+)
G183001 pgm2 other downstream 696253 6042688 ~ 6048474 (+)
pax5 pax5 other downstream 904339 6250774 ~ 6367190 (+)
rnf38 rnf38,LOC107551561 other downstream 1098828 6445263 ~ 6498192 (+)
LOC103036850 NA other downstream 1176778 6523213 ~ 6664763 (+)

Expression


Co-expression Network