LOC103027465 (chrnb2a,LOC108412405,LOC107656869,LOC107548317,LOC107562601,LOC107702400)


Basic Information

Item Value
gene id LOC103027465
gene name chrnb2a,LOC108412405,LOC107656869,LOC107548317,LOC107562601,LOC107702400
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 6704877 ~ 6732876 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681756.1
gTAATACTCTGTTTATGGAGCATTAATCCGAGAGGATTTACAGAAAAGCCCGGGAATAAGCATCCCATTCAGCGGCGGCAGTTTTCCCGCGTCTTTTTCAAACTCAGCACGCgaggtgttgttttttttttaacttaacgGTTTTAACCAACTCCAACAGCTTTACCAACACGGCGAGGAGAACTTTTCCCCTCATAAACGCAGAGGAAAAGAGTGTAAAAGGAGGAAAAAGAGGAGTAAAGAGGGGGAGAGGGACGGGACCTTGACTGGGAGATGGCCGTGAGGTGGCTGAGTCTGCTGGTTCTGCTGGTTCTTCAGACTGACAGTTCTCTACAGGCAGACGCTGAGGAGCGGCTGGTGGAGTTTCTGTTGGGTCCAGAGCGCTACAATAAACTGATTAGGCCCGCGGTCAATAAGAGCCAGCAGGTCACCATCGGCATCAAAGTGTCCTTGGCTCAGCTCATCAGTGTGAACGAACGGGAGCAGATCATGACGACTAACGTGTGGCTCACGCAGGAGTGGAACGACTACAGACTAGTGTGGGACCCAGATGAATATGACGGCATCAAAAAACTCAGAATCCCCTCCCACCACATCTGGCTGCCTGATATAGTCCTCTACAACAAtgcagacGGCGTGTACGAGGTCTCCTTCTACAGCAATGCCATTGTCGCCAACACAGGTGACATCTTCTGGCTCCCTCCAGCCATCTACAGGAGCGCCTGTGCCATCGAGGTTCGAAATTTCCCCTTTGACCAGCAGAACTGCACGCTCAAGTTCCGCTCGTGGACATACGACCGCACCGAGCTGGACCTCGTGCTGACCTCGGACTTCGCCAGCCGAGACGACTACACGCCCAGTGGTGAATGGGACATCGTCTCGCTGCCTGGCCGCAAGAACGAAGACCCCAACGATCTTACGTACATGGACGTGACGTACGACTTTGTCATCAAGCGCAAGCCGCTCTTCTACACCATCAACCTCATCATCCCCTGTGTGCTGATCACCTCGCTGGCCATCCTGGTGTTCTATCTGCCGTCAGACTGTGGTGAGAAGGTGACACTTTGCATCTCTGTTCTGCTTGCGCTCACTGTGTTTTTGTTGCTAATTTCCAAGATTGTACCTCCGACTTCACTGGCTGTTCCATTGATTGGGAAGTATCTGATGTTCACCATGGTACTGGTCACTTTCTCCATCGTCACAAGTGTCTGCGTCCTCAACGTACACCACCGCTCGCCGTCCACTCACCGCATGCCCGAGTGGGTCAAGCGAGTCTTTCTGCGTCGGCTGCCTGTCTTTTTACTCATGCGGCGGCCTGGAAGTTCCAACGTACGGGAAAAGTTCAGGAAGAAGCATCAGCACAAGTCATTTTCCAGCAGTCCACAGGACGGTGACACATACGTCCTTGGTGAGGACCCTGGAAGAGCCTGGAGGTTGGGCGAGCTTCCAGAGGGGTCGGAGTTTAGGCAGAGGGTCAGGCTCAGACGTGACCCTGAAGTGGACGAGGCCATTGAGGGTGTACGCTTCATCGCCGAACACATGAAGATcgaagatgatgatgaagggaTCATCGAGGACTGGAAGTACGTCGCGATGGTGATCGACCGCTTGTTCCTCTGGGTTTTTatcctggtgtgtgtgactggaaCTCTCGGCCTCTTCGTTCAGCCGCTGTTCCAAAGCTACAACACCCCCGTAGCGAAGGACGAcTTCGGCGATTTCTAAACATCTGCCGGTTCACCTCGAGAGGATGTACGAACACATACCTGCAGCAATAAGACCAAGGATATAAGTCATAGACTGAGACTGAGATCCAGTCTGATGTTTGGTAGCAAATCTCAAtagttttgcattgttttcGAAATATGCAAAAGTATGTGGTGTTGTATTTAAGATGAAAAACCTTTTTTAGTTGGAATAAGCTGTGCATTATAAGTGACTACAAATAGTTACAGTTCTAAATAAACAACATTATGGCATTATGGGA
>XM_022681757.1
tgTAATACTCTGTTTATGGAGCATTAATCCGAGAGGATTTACAGAAAAGCCCGGGAATAAGCATCCCATTCAGCGGCGGCAGTTTTCCCGCGTCTTTTTCAAACTCAGCACGCgaggtgttgttttttttttaacttaacgGTTTTAACCAACTCCAACAGCTTTACCAACACGGCGAGGAGAACTTTTCCCCTCATAAACGCAGAGGAAAAGAGTGTAAAAGGAGGAAAAAGAGGAGTAAAGAGGGGGAGAGGGACGGGACCTTGACTGGGAGATGGCCGTGAGGTGGCTGAGTCTGCTGGTTCTGCTGGTTCTTCAGACTGACAGTTCTCTACAGGCAGACGCTGAGGAGCGGCTGGTGGAGTTTCTGTTGGGTCCAGAGCGCTACAATAAACTGATTAGGCCCGCGGTCAATAAGAGCCAGCAGGTCACCATCGGCATCAAAGTGTCCTTGGCTCAGCTCATCAGTGTGGAGTGGAACGACTACAGACTAGTGTGGGACCCAGATGAATATGACGGCATCAAAAAACTCAGAATCCCCTCCCACCACATCTGGCTGCCTGATATAGTCCTCTACAACAAtgcagacGGCGTGTACGAGGTCTCCTTCTACAGCAATGCCATTGTCGCCAACACAGGTGACATCTTCTGGCTCCCTCCAGCCATCTACAGGAGCGCCTGTGCCATCGAGGTTCGAAATTTCCCCTTTGACCAGCAGAACTGCACGCTCAAGTTCCGCTCGTGGACATACGACCGCACCGAGCTGGACCTCGTGCTGACCTCGGACTTCGCCAGCCGAGACGACTACACGCCCAGTGGTGAATGGGACATCGTCTCGCTGCCTGGCCGCAAGAACGAAGACCCCAACGATCTTACGTACATGGACGTGACGTACGACTTTGTCATCAAGCGCAAGCCGCTCTTCTACACCATCAACCTCATCATCCCCTGTGTGCTGATCACCTCGCTGGCCATCCTGGTGTTCTATCTGCCGTCAGACTGTGGTGAGAAGGTGACACTTTGCATCTCTGTTCTGCTTGCGCTCACTGTGTTTTTGTTGCTAATTTCCAAGATTGTACCTCCGACTTCACTGGCTGTTCCATTGATTGGGAAGTATCTGATGTTCACCATGGTACTGGTCACTTTCTCCATCGTCACAAGTGTCTGCGTCCTCAACGTACACCACCGCTCGCCGTCCACTCACCGCATGCCCGAGTGGGTCAAGCGAGTCTTTCTGCGTCGGCTGCCTGTCTTTTTACTCATGCGGCGGCCTGGAAGTTCCAACGTACGGGAAAAGTTCAGGAAGAAGCATCAGCACAAGTCATTTTCCAGCAGTCCACAGGACGGTGACACATACGTCCTTGGTGAGGACCCTGGAAGAGCCTGGAGGTTGGGCGAGCTTCCAGAGGGGTCGGAGTTTAGGCAGAGGGTCAGGCTCAGACGTGACCCTGAAGTGGACGAGGCCATTGAGGGTGTACGCTTCATCGCCGAACACATGAAGATcgaagatgatgatgaagggaTCATCGAGGACTGGAAGTACGTCGCGATGGTGATCGACCGCTTGTTCCTCTGGGTTTTTatcctggtgtgtgtgactggaaCTCTCGGCCTCTTCGTTCAGCCGCTGTTCCAAAGCTACAACACCCCCGTAGCGAAGGACGAcTTCGGCGATTTCTAAACATCTGCCGGTTCACCTCGAGAGGATGTACGAACACATACCTGCAGCAATAAGACCAAGGATATAAGTCATAGACTGAGACTGAGATCCAGTCTGATGTTTGGTAGCAAATCTCAAtagttttgcattgttttcGAAATATGCAAAAGTATGTGGTGTTGTATTTAAGATGAAAAACCTTTTTTAGTTGGAATAAGCTGTGCATTATAAGTGACTACAAATAGTTACAGTTCTAAATAAACAACATTATGGCATTATGGGA

Function

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit beta-2

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0008542 visual learning biological_process
GO:0035095 behavioral response to nicotine biological_process
GO:0007613 memory biological_process
GO:0006812 cation transport biological_process
GO:0001666 response to hypoxia biological_process
GO:0007165 signal transduction biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0042166 acetylcholine binding molecular_function
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K04813 CHRNB2; nicotinic acetylcholine receptor beta-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681756.1 True 1987 mRNA 0.51 7 6704878 6732876
XM_022681757.1 False 1943 mRNA 0.51 6 6704877 6732876

Neighbor

gene id symbol gene type direction distance location
LOC111195266 NA coding upstream 62482 6640547 ~ 6642395 (+)
LOC111195195 NA coding upstream 86164 6610589 ~ 6618713 (+)
LOC111195264 NA coding upstream 140550 6551253 ~ 6564327 (+)
LOC103028415 NA coding upstream 579093 6101885 ~ 6125784 (+)
trnap-agg_6 NA coding upstream 859375 5845431 ~ 5845502 (+)
LOC103022127 chrna6,LOC108412407,LOC107655806,LOC107709456,LOC107750436 coding downstream 39695 6772571 ~ 6813525 (+)
LOC103031277 chrnb3a,LOC108410818,LOC107562617,LOC107702298,LOC107750476,LOC107655822,LOC107548357 coding downstream 118346 6851222 ~ 6878321 (+)
primpol NA coding downstream 727053 7459929 ~ 7478267 (+)
LOC111195272 NA coding downstream 779821 7512697 ~ 7514718 (+)
LOC103036243 LOC108439191 coding downstream 1894478 8627354 ~ 8739863 (+)
LOC111195198 NA non-coding upstream 153968 6539479 ~ 6550909 (+)
G183099 NA non-coding upstream 174496 6529941 ~ 6530381 (+)
G183097 NA non-coding upstream 193813 6509311 ~ 6511064 (+)
G183086 NA non-coding upstream 206871 6478227 ~ 6498006 (+)
G183081 NA non-coding upstream 288140 6416342 ~ 6416737 (+)
G183199 NA non-coding downstream 354084 7086960 ~ 7088091 (+)
G183201 NA non-coding downstream 361833 7094709 ~ 7095233 (+)
G183209 NA non-coding downstream 380072 7112948 ~ 7115091 (+)
G183221 NA non-coding downstream 445306 7178182 ~ 7179146 (+)
G183207 LOC108443989,LOC108260977,LOC105904014,LOC105891541 non-coding downstream 458006 7190882 ~ 7201991 (+)
LOC103036850 NA other upstream 40114 6523213 ~ 6664763 (+)
rnf38 rnf38,LOC107551561 other upstream 206685 6445263 ~ 6498192 (+)
pax5 pax5 other upstream 337687 6250774 ~ 6367190 (+)
G183001 pgm2 other upstream 656403 6042688 ~ 6048474 (+)
G182790 NA other upstream 1277622 5426867 ~ 5427255 (+)
LOC103028013 LOC108410819,LOC107548356,LOC107655813,LOC107702399,LOC107709454,LOC107562618,LOC108260988 other downstream 164604 6897480 ~ 7009923 (+)
G183215 NA other downstream 481595 7214471 ~ 7217139 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other downstream 2137961 8870837 ~ 8983969 (+)
G183387 NA other downstream 2478458 9211334 ~ 9293703 (+)
LOC111195202 NA other downstream 3106060 9838936 ~ 9844659 (+)

Expression


Co-expression Network