LOC103022127 (chrna6,LOC108412407,LOC107655806,LOC107709456,LOC107750436)


Basic Information

Item Value
gene id LOC103022127
gene name chrna6,LOC108412407,LOC107655806,LOC107709456,LOC107750436
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 6772571 ~ 6813525 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681758.1
GCGCGCAACTGAGCGCGCGCTCACATTCCTCTCCTCcgctcttctctgtctctcggtctctctgtctctgtttttcctccctttttcttctcttcttttcctttACCGTCCACTTTTAGTGGCGCTCGCGGGACAGACGGATGCCTCGCGCGGGGAGACGCactttcttcctcttcctcctcctgctcttccTCATCACTCTCATGGCGCGAGagtgtTTCTCGTCTAAAGGCGAGGACAGGCTGTTCCGGCGCCTGTTCAGGAGGTATAATCAGTTCATCCGGCCGGTGGAGAATGTGTCCGATCCGGTGACGGTGGAGTTCGAGGTTTCTATCTCTCAGCTCGTCAAAGTGGATGAAGTCAATCAGATCATGGAGACCAACCTCTGGTTGAGACATATATGGAACGACTACAAGCTGAAATGGATACCAGCAGAATTTGATGGTATCGAGTACATCAGGGTTCCGTCCAATAAGATCTGGAGGCCAGACATTGTGCTCTACAACAATGCTGTAGGTGACTTCTTGGTGGAAGACAAAACCAAAGCTTTGCTTAAGTTTGACGGCACCATCACGTGGGTCCCTCCAGCCATCTTCAAATCCTCCTGCCCAATGGATATCACCTACTTCCCATTCGACTACCAAAACTGTTCCATGAAGTTTGGGTCATGGACCTACGACAAGGCCAAGATCGATCTGGTCCTGATTGGCTCTAAGGTCAACCTCAAAGACTTTTGGGAGAGCGGAGAGTGGGAGATCATTGACGCACCTGGATACAAGCATGACATCAAGTACAACTGCTGCGAGGAGATATACCCAGACATCACCTACAGCTTCTACATCCGTCGCCTTCCCCTGTTCTACACCATCAATCTCATTATCCCGTGCCTCCTTATTTCCTTCTTAACAGTCCTGGTTTTCTACCTTCCATCAGACTGTGGGGAGAAGGTTACACTCTGCATCTCAGTCCTTCTGTCCCTTACCGTGTTCCTGCTGGTCATCACGGAGACCATTCCGTCTACCTCCTTGGTAATCCCTCTGATTGGCGAGTACCTGCTCTTCACCATGATATTCGTTACACTCTCAATCGTCATCACTGTCTTCGTACTCAACGTTCACTACCGAACGCCCACTACCCACACCATGCCCGGGTGGGTCCGCACCGTCTTCCTCCGGGCCTTGCCTCGCATCATGCTGATGCGGCGCCCAATCGATCAATCAGAATCTTCAACTAAGGGCGGCGGACACGAAAGtgggggctcgtccgggatcGGCAGCAGTGGAGGAGGTGGTAGAGGAGGGGAagggaagaagaggaagaacagcagctctcagcaggGGGCTATGAACTGTTTGGAGTTTGGAGAGGGCAAGGGTTCGGGCGAGGGGAAGAAAGGAGTTTGCCCATGTCATCCAGCGAAAGAGGGGCCCGAAGTCGATTGTGGAAAAGTGAGTCGCCAGTTGAGCCCACAAGCCATAAACACGGTTGTGGCTTTTTCAGTGGTGTCTCCAGAGATCAAGCAGGCCATTGAAAGTGTCAAGTACATCGCGGAGAACATGAGGAGCCGCAACAAGGCTAAAGAGGTGGAAGATGACTGGAAGTACGTTGCCATGGTGATTGACCGGATCTTCCTCTGGGTCTTTGTGCTGGTCTGCGTGCTCGGAACGGTGGGCCTCTTCTTCCAGCCTCTTATTGGTTTCCTCTCATAACTGCCGGCCAATCACGTGCACTGGATTGGCTttcccagccaatcagagacacaGGACAGTCTGTCTCAGCCGATTACCCAAATCACTGACACGCCAATTACAACCACTTCTGCTTTAcggcaacaaaaacaaaaagacactgCAATCGACTGGACTGCTTGGTAAAGCTAAACAACGAATCACGTGTTGATGAGGTGTTCAATGTTCGGGTGCAATAAACAGCCAATCAGTAGTTCTAGATCGTCTCCGCCACATTGCAGTACAGATTGCCACAAGCTGCGTTCCAAAGTCTAGGCTGTAGTCGAGGTCGAGCAGGTCTTCTATAGGACTGTCCTTCAAAGGTTTTGCTCTTGAGgcttcattttctgcaattttcGCCCAATTGTTGAGgagctcttcttcttttttttccttcacatTGAGCATTTACAGAGAACCACGTGTAACCGAAGGCCAAGATGCATCAGTTGCGTCCTTCAATTCCCTCAAAACGTCAGCTGCATTTCTGTAACAGCCGTATACAAAGAGTCTTTCACTTTAAAacagccttctatgatgtagcGGCCAAGAATGGCAGCCCACCTCCACTGCAGCCTACGTTTTGGAAAGCAGCTACAGTGTCAGCGGGGTTGATGTTTGCTATTTTGGTGCATGCAAACAGCTAATCAGGTGTTCGCTAATCTCCCTTTATCCTCAAATGGCTAACGGCACGTTTTAACGGCCTTCGTAAACCCGCAAGACAGTCAGAAATTAGCTGTTTACAGATATACAACTTTATCCGTTTGTATCAATTACTTTTACCAATGAAGTATGGCACTTTCTATGgaaatttctttctttctcctttcatACAATCATGTCTGTTCCCCAGAACTGGAAAGTCAAAAGGGAAACTACTTGATATGCAGGAACAAAGCAACTAGTAAACTAAAAAgcagaaactgagaaaaacGAAAAGCGACATGACGAGACGTGGAGAACGTAGAGGGCAGAGCATATGGAGCACAAATAGAACGAAGCCAGAAGGTTGTAGAACAGAAAAACATGAGAGATCTGAAGGATCTGTAGCAGAAGAAGTCTgcatacaagttttttttaaattatgtcaaATAGAACAAAGTCAAAAAAGGTCTTAGAACCGATAGGGAGAGGCCAGATGATGACAGAAGGTTCGAGAACGTACAAAAATCTAGGTCAAgccagaaaaagacagaaatgtTTGGGTCATAAGTTTCTGAAACAGAAAGAGGTtcaatttttcaagtttttagaACAGGTATCGATCCTAGAATAGACTGAAAAGGTGACGATGGTTCAGAAGGTTCTAGAAAAAATACGATGGAGCCAggttctaaaaaaaatgttggggcTAGAAGGTTTCAGACAAGACAGAACAGATAGAACAAAGTCAGAAAGGTCTTAGAACCAATAGGGAGAAGGTTCTTGAACATCCAAAAAAGCCAGAATAGTTcaggtcatatatatatatatacaacataaaacaatatatacaacaACTGTCTCTATTAAAtttgtagttacacattaacaatttGTGTAATAACtatgtaactactggtgaagatTCCACAATTATAGGTCGATTACAGTTGTACATgttacacaattacacatgaGTATAAAGTAAAgttctcaaaatgtgaccttGAGATGTTgattaaaactaaaatgtaacCTGATGGTTTGACAtcacaaaatttaaaaaaggtcaGTCAAGAAAGTGATCATAGTTTGTTGATTTGCAATGACATACcctgtaaaactgtaattaatatgtaataatgcgtatttcaccagtagttacactgttattacatggattgaaactgaaacatgaACCAATACTGGTTCTATCTTCTAGAATCATCAGGAATCCACTAGGAATGGAAGATCAAGACCAAGAGTTCccctgttgcacaggataagttaatcagagttaccagcctcagctattttgcttttttgccAGCTATAACATCAGTTACCATAATTATCAAAGTCGATATTTGCATCTTCCTCCCTGACGGGGACAAACTGCCAATTGCTTCTCAGGAAAATTGCGCAAAATACGCACTAACCGCTGGAGGTCAACGACGATTTGTCGCATGGTGACGTCCAGCTCGGTATTCTTATAGAGGATAAAAGCCAACATTGTAAACGTGAGTTGGCATTAGTTTAGAATGTgtacgattaaaaaaaaaacactcaagtGGGTCAGATTTACAAACTTACAGATTTACTTGCATTTGTTCATTTTCGGTTGCATTAATAAATACGTTACACTTTTTCCATGttcagtggcttgcaaaagtattcatcctactggaacttttccacattttatcaccttacaaccacaa

Function

symbol description
chrna6 Predicted to enable neurotransmitter receptor activity. Predicted to be involved in several processes, including chemical synaptic transmission; ion transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in immature eye and nervous system. Orthologous to human CHRNA6 (cholinergic receptor nicotinic alpha 6 subunit).

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit alpha-3

GO:

id name namespace
GO:0060084 synaptic transmission involved in micturition biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0035095 behavioral response to nicotine biological_process
GO:0007399 nervous system development biological_process
GO:0006812 cation transport biological_process
GO:0007165 signal transduction biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K04808 CHRNA6; nicotinic acetylcholine receptor alpha-6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681758.1 True 4090 mRNA 0.45 6 6772571 6813525

Neighbor

gene id symbol gene type direction distance location
LOC103027465 chrnb2a,LOC108412405,LOC107656869,LOC107548317,LOC107562601,LOC107702400 coding upstream 39695 6704877 ~ 6732876 (+)
LOC111195266 NA coding upstream 130176 6640547 ~ 6642395 (+)
LOC111195195 NA coding upstream 153858 6610589 ~ 6618713 (+)
LOC111195264 NA coding upstream 208244 6551253 ~ 6564327 (+)
LOC103028415 NA coding upstream 646787 6101885 ~ 6125784 (+)
LOC103031277 chrnb3a,LOC108410818,LOC107562617,LOC107702298,LOC107750476,LOC107655822,LOC107548357 coding downstream 37697 6851222 ~ 6878321 (+)
primpol NA coding downstream 646404 7459929 ~ 7478267 (+)
LOC111195272 NA coding downstream 699172 7512697 ~ 7514718 (+)
LOC103036243 LOC108439191 coding downstream 1813829 8627354 ~ 8739863 (+)
klhl2 klhl2,LOC107655955,LOC107745059,LOC107591556,LOC107702385 coding downstream 1938602 8752127 ~ 8778943 (+)
LOC111195198 NA non-coding upstream 221662 6539479 ~ 6550909 (+)
G183099 NA non-coding upstream 242190 6529941 ~ 6530381 (+)
G183097 NA non-coding upstream 261507 6509311 ~ 6511064 (+)
G183086 NA non-coding upstream 274565 6478227 ~ 6498006 (+)
G183081 NA non-coding upstream 355834 6416342 ~ 6416737 (+)
G183199 NA non-coding downstream 273435 7086960 ~ 7088091 (+)
G183201 NA non-coding downstream 281184 7094709 ~ 7095233 (+)
G183209 NA non-coding downstream 299423 7112948 ~ 7115091 (+)
G183221 NA non-coding downstream 364657 7178182 ~ 7179146 (+)
G183207 LOC108443989,LOC108260977,LOC105904014,LOC105891541 non-coding downstream 377357 7190882 ~ 7201991 (+)
LOC103036850 NA other upstream 107808 6523213 ~ 6664763 (+)
rnf38 rnf38,LOC107551561 other upstream 274379 6445263 ~ 6498192 (+)
pax5 pax5 other upstream 405381 6250774 ~ 6367190 (+)
G183001 pgm2 other upstream 724097 6042688 ~ 6048474 (+)
G182790 NA other upstream 1345316 5426867 ~ 5427255 (+)
LOC103028013 LOC108410819,LOC107548356,LOC107655813,LOC107702399,LOC107709454,LOC107562618,LOC108260988 other downstream 83955 6897480 ~ 7009923 (+)
G183215 NA other downstream 400946 7214471 ~ 7217139 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other downstream 2057312 8870837 ~ 8983969 (+)
G183387 NA other downstream 2397809 9211334 ~ 9293703 (+)
LOC111195202 NA other downstream 3025411 9838936 ~ 9844659 (+)

Expression


Co-expression Network