msmo1 (msmo1,LOC107750426,LOC107702386,LOC107655978)


Basic Information

Item Value
gene id msmo1
gene name msmo1,LOC107750426,LOC107702386,LOC107655978
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 8784880 ~ 8793907 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681781.1
TTAGAGCGGCTGGAGCTCGCGCAGGTAGAAGACGTGCTTCTCACAGGTGCCCCCACTGAGCTGCAGGTATGGAGGTGAACCAGACCGACATTCTGTCCTCGGCGTTCCTCGCCGTGGAGTACGTGGACTCTCTGCTGCCGGAGAACCCCCTGCAGATGCCGGTGAAATCGGCATGGAACTACATGCTGCAGAACTACACCAAGTTCCAGATCGCCACCTGGGGTTCCCTCATCGTCCACGAGCTGGTCTACTTTCTCTTCTGCCTGCCGGGCTTCCTGTTCCAGTTCATGCCGTTCATGCAGAAGTACAAGATTCAGCAGGATAAACCAGAGACGTGGGAGAAGCAGTGGAAGTGCTTTAAGATGCTCCTCTTTAATCACTTCTGCATCCAGCTGCCTATGATCTGCGGGACGTACTACTTCACCGAGTTCTTCGGCATCCCGTACGACTGGGAATCCATGCCCCGCTGGCCGTATCTGTTGGCTCAGTGTTTCGGCTGTGCGGTGATCGAGGACACCTGGCACTACTTCCTCCACCGAGCCCTGCACCACCGCCGGGTCTACAAATACATCCACAAAGTCCACCACGACTTCACCtCTCCGTTCGGGATGCAGGCGGAATACGCTCACCCCTTGGAGACGATAATTCTGGGGGCGGGGTTCTTCATCGGGATCATGGTGTTCTGTAATCACATGGCTCTGCTTTGGGCCTGGGTCACCTTCCGCCTGCTGGAGACCATCGACGtgcacagTGGGTACGATATCCCTCTGAACCCATTGCACCTGATCCCGTTCTACGCCGGCGCTCGCTTCCACGACTTCCACCACATGAACTTCGTGGGAAACTACGGCTCGACGTTCACTTGGTGGGATCGGCTCTTTAACACCGACTCCCAGTTCAACAGCTACACTGACAAACAGAACCTGAAGAAGGACCAGTAACACAccagtgcaaacacacacacacacacacacatacttgctAATGTGTTTGAAACGGGACCAGGACTGAACAGGACTGTCAGTGTGTCAGGACCAGCATCCTGAACTTCACCCAGCGTgccttttaaagaaaaagacaaacacTCACAATCAAGCTTACACTTACTGTACACTATATACAGCCATGGCCATAACTAACGGGACCccatcacttttttttctgaaatggtTGGAATTACAAATCTACTTTAACTTACTGGGGACATGGTTTCAGTCCCTGTTCACTGTAACTGTATGAGGGTCCCTCCAGGTGCTCTAGTTTTCTCTCACCTCCCAAATATAGGGTAGTTTTCAAAGGCGCAACAAATTATAGGGCCCATTGTGCGACAGTAGTAAGGAaaaggggt

Function

symbol description
msmo1 Predicted to enable C-4 methylsterol oxidase activity. Predicted to be involved in sterol biosynthetic process. Predicted to act upstream of or within steroid biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in epidermis; head; lens; and otic vesicle. Orthologous to human MSMO1 (methylsterol monooxygenase 1).

NR:

description
PREDICTED: methylsterol monooxygenase 1

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0016126 sterol biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0000254 C-4 methylsterol oxidase activity molecular_function

KEGG:

id description
K07750 MESO1, ERG25; methylsterol monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681781.1 True 1348 mRNA 0.52 8 8784880 8793907

Neighbor

gene id symbol gene type direction distance location
klhl2 klhl2,LOC107655955,LOC107745059,LOC107591556,LOC107702385 coding upstream 5937 8752127 ~ 8778943 (+)
LOC103036243 LOC108439191 coding upstream 45017 8627354 ~ 8739863 (+)
LOC111195272 NA coding upstream 1270162 7512697 ~ 7514718 (+)
primpol NA coding upstream 1306613 7459929 ~ 7478267 (+)
LOC103031277 chrnb3a,LOC108410818,LOC107562617,LOC107702298,LOC107750476,LOC107655822,LOC107548357 coding upstream 1906559 6851222 ~ 6878321 (+)
cpe cpe,LOC107745061,LOC107548348,LOC107591555 coding downstream 7237 8801144 ~ 8846414 (+)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 coding downstream 296376 9090283 ~ 9184039 (+)
LOC103047154 ndst3,LOC108439183,LOC108260488,LOC107591550,LOC107551574,LOC107702380,LOC107750457 coding downstream 674667 9468574 ~ 9650975 (+)
LOC111195203 LOC108411626 coding downstream 1061905 9855812 ~ 9865765 (+)
LOC111195273 NA coding downstream 1190705 9984612 ~ 9985691 (+)
G183312 NA non-coding upstream 41907 8702426 ~ 8742973 (+)
G183293 NA non-coding upstream 1285398 7480385 ~ 7499482 (+)
G183289 ncapd3 non-coding upstream 1326176 7433978 ~ 7458704 (+)
G183251 wdr19 non-coding upstream 1367850 7411797 ~ 7417030 (+)
G183248 wdr19,LOC107591558 non-coding upstream 1387496 7394430 ~ 7397384 (+)
G183361 NA non-coding downstream 206948 9000855 ~ 9039749 (+)
G183376 NA non-coding downstream 387033 9180940 ~ 9512425 (+)
G183389 NA non-coding downstream 489702 9283609 ~ 9288142 (+)
G183391 NA non-coding downstream 511488 9305395 ~ 9306685 (+)
G183405 NA non-coding downstream 766803 9560710 ~ 9932597 (+)
G183215 NA other upstream 1567741 7214471 ~ 7217139 (+)
LOC103028013 LOC108410819,LOC107548356,LOC107655813,LOC107702399,LOC107709454,LOC107562618,LOC108260988 other upstream 1774957 6897480 ~ 7009923 (+)
LOC103036850 NA other upstream 2120117 6523213 ~ 6664763 (+)
rnf38 rnf38,LOC107551561 other upstream 2286688 6445263 ~ 6498192 (+)
pax5 pax5 other upstream 2417690 6250774 ~ 6367190 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other downstream 76930 8870837 ~ 8983969 (+)
G183387 NA other downstream 417427 9211334 ~ 9293703 (+)
LOC111195202 NA other downstream 1045029 9838936 ~ 9844659 (+)
LOC111195140 NA other downstream 1270945 10064852 ~ 10072047 (+)
LOC111195207 LOC107375340,LOC106958509,LOC105896809,LOC107671222,LOC107690788 other downstream 1304639 10098546 ~ 10101547 (+)

Expression


Co-expression Network