LOC111195205


Basic Information

Item Value
gene id LOC111195205
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 9995609 ~ 9996842 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681797.1
TCTTCTCGCTCCTCCCTGTCACCTTGTCCATCACCCAGAAACCTGCTTAATGCCGATTGGGTTGACCACTTTGAAATTCCTACTGAAAGATTTCCTGAGGCTCTGATGCAATGTCTGGAGAGAGGCAAGAGGCCCGTCCCGAGTTTAAGACGAGAAATGATCAGAATCGTTGCAGCAGAGATGATGAAGACGTGTCCGTCTCCTACAAAGCATGCTTCTACAGAAATCGCCAAAAAGTTAGTTGGCAAGTATCCTCAGTCATTGAAGGATGTCATCGAAGGGGACGTTGTGGGGACCGGATACCACAGCCTTGTTAAACAGCTTCAAGCCCGTATAGACAACAAAAAGCGCAATGCATCCCCAAGAATACATAAACGCAAATCGTTGTCAAACTCTGACACAGATGAGGTCCCAGCAGTAATGAAAGCGTCAGTCCAGGATATGTATGGCTGTGTTAAGTGGGACATGAAGTTCATGCCAGTCACAGAAACCCTGGAAAGccaaaatgaaaagaaaggaaaaatgagGTTTCTGTGGGAACAAGCCACTTTCAACCCAGACGAGGTGAAGGAATTGATGGAATCCACGTACTATTCACAGAGTAAGGAAATTAACAGTGGAACAGCTCTTCAAACACTGAGAGAAGAATGGCCTTTTTTGTTTCACGAAATTGGGATTTCTGCCCACTACCAGGAGCTAACAGGACTGCCACTGACGCAGACATTCCTGAAAAGTgcggaaaaaaagggaaaacagCTCCTAAACTTCATGGCAACTGTTTGTGCAAACAAGACCAGGCATGTCTTTGAGACATTGACCAAGCTAAGGTTCCAGAGAGGGCAGTTGGAGGGCTGCTCGGATGACGTGAAGGATATGCTGCTTTTGCTGCTTTCCTACTTTAATGGAGACGAGGCAACCCTGTTCCACTACACTGAAGAAACCAACCAGGCAGCCGACGTTCAGGAGCCTCCTGCTACAGTGCCAATAGATTCATGCTGAGCATTGACGGCAAAATTGTTAATGACAACATTGCCCAATTCATCGCTGCCATCAACGTAATGTTCGGCAGCTACTACTGCCTGAACATCCACTATCCAGTACAGTTGAGATCAACGCTGGAGTTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681797.1 True 1126 mRNA 0.47 2 9995609 9996842

Neighbor

gene id symbol gene type direction distance location
LOC111195273 NA coding upstream 9918 9984612 ~ 9985691 (+)
LOC111195203 LOC108411626 coding upstream 129844 9855812 ~ 9865765 (+)
LOC103047154 ndst3,LOC108439183,LOC108260488,LOC107591550,LOC107551574,LOC107702380,LOC107750457 coding upstream 344634 9468574 ~ 9650975 (+)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 coding upstream 811570 9090283 ~ 9184039 (+)
cpe cpe,LOC107745061,LOC107548348,LOC107591555 coding upstream 1149195 8801144 ~ 8846414 (+)
LOC111195208 LOC107690133,LOC107745493,LOC107715185,LOC107581013,LOC107738483,LOC107756941,LOC107569589,LOC107740227,LOC108419634,LOC108417841 coding downstream 107012 10103854 ~ 10104501 (+)
LOC111195210 NA coding downstream 153096 10149938 ~ 10154831 (+)
LOC111195211 NA coding downstream 161941 10158783 ~ 10160102 (+)
LOC103042950 NA coding downstream 521015 10517857 ~ 11115248 (+)
LOC103043730 lhcgr,LOC108412992 coding downstream 1394652 11391494 ~ 11402281 (+)
LOC111195206 NA non-coding upstream 2024 9918054 ~ 9993585 (+)
G183405 NA non-coding upstream 63012 9560710 ~ 9932597 (+)
G183468 NA non-coding upstream 78877 9907117 ~ 9916732 (+)
G183461 NA non-coding upstream 95881 9890780 ~ 9899728 (+)
G183448 NA non-coding upstream 143257 9845003 ~ 9852352 (+)
G183499 NA non-coding downstream 9841 10006683 ~ 10033240 (+)
G183514 NA non-coding downstream 48387 10045229 ~ 10045463 (+)
G183641 NA non-coding downstream 53733 10050575 ~ 10050828 (+)
G183643 NA non-coding downstream 54949 10051791 ~ 10052330 (+)
G183647 NA non-coding downstream 65675 10062517 ~ 10062985 (+)
LOC111195202 NA other upstream 150950 9838936 ~ 9844659 (+)
G183387 NA other upstream 701906 9211334 ~ 9293703 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other upstream 1011640 8870837 ~ 8983969 (+)
G183215 NA other upstream 2778470 7214471 ~ 7217139 (+)
LOC103028013 LOC108410819,LOC107548356,LOC107655813,LOC107702399,LOC107709454,LOC107562618,LOC108260988 other upstream 2985686 6897480 ~ 7009923 (+)
LOC111195140 NA other downstream 68010 10064852 ~ 10072047 (+)
LOC111195207 LOC107375340,LOC106958509,LOC105896809,LOC107671222,LOC107690788 other downstream 101704 10098546 ~ 10101547 (+)
G183671 NA other downstream 113024 10109866 ~ 10110741 (+)
LOC111195212 LOC108414267,LOC106946373,LOC103130468,LOC102227983,LOC108269716,LOC108261415,LOC105936005,LOC107386469,LOC107577828,LOC107569598,LOC107677420 other downstream 148611 10145453 ~ 10171103 (+)
G183680 NA other downstream 155125 10151967 ~ 10158707 (+)

Expression


Co-expression Network