LOC111195208 (LOC107690133,LOC107745493,LOC107715185,LOC107581013,LOC107738483,LOC107756941,LOC107569589,LOC107740227,LOC108419634,LOC108417841)


Basic Information

Item Value
gene id LOC111195208
gene name LOC107690133,LOC107745493,LOC107715185,LOC107581013,LOC107738483,LOC107756941,LOC107569589,LOC107740227,LOC108419634,LOC108417841
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 10103854 ~ 10104501 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681799.1
AGGGGTATTAGAGTGGAGCGAGTTGTGTTTGTCCAATGGTGGTTTGACGGCATTTGAAAGGCGTGACTCATGTTAATTAGACTGGCAGAGTGCAAATAACGTGGGGGTTAGTCGCCTCCCCCTCATTCTTCAGTCTAACTCGAAGAGAAGCAGGATGCCTGAGCCAGCCAAGTCCGCCCCGAAGAAGGGCTCCAAGAAGGCCGTTACCAAGACCGCCGGGAAGGGAGGCAAGAAGCGCAGAAAGTCCAGGAAGGAGAGCTACGCCATCTACGTCTACAAGGTGTTGAAGCAGGTCCACCCCGACACCGGAATCTCCTCAAAGGCGATGGGTATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGTGAGTCTTCCCGCCTGGCTCACTACAACAAGCGTTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGCCTGCTTCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGAACCAAGGCCGTCACCAAGTACACCAGCTCCAAGTAAAGAGCCAACCCGCTCTGTTCAAACCCAACGGCTCTTTTAAGAGCCACCCACGTTTTCCCCTAAAGAGCAGCGTTCCGTGTCctttttctaatgttttgataaagaaaatatgtataaat

Function

NR:

description
PREDICTED: histone H2B-like

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11252 H2B; histone H2B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681799.1 True 648 mRNA 0.54 1 10103854 10104501

Neighbor

gene id symbol gene type direction distance location
LOC111195205 NA coding upstream 107012 9995609 ~ 9996842 (+)
LOC111195273 NA coding upstream 118163 9984612 ~ 9985691 (+)
LOC111195203 LOC108411626 coding upstream 238089 9855812 ~ 9865765 (+)
LOC103047154 ndst3,LOC108439183,LOC108260488,LOC107591550,LOC107551574,LOC107702380,LOC107750457 coding upstream 452879 9468574 ~ 9650975 (+)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 coding upstream 919815 9090283 ~ 9184039 (+)
LOC111195210 NA coding downstream 45437 10149938 ~ 10154831 (+)
LOC111195211 NA coding downstream 54282 10158783 ~ 10160102 (+)
LOC103042950 NA coding downstream 413356 10517857 ~ 11115248 (+)
LOC103043730 lhcgr,LOC108412992 coding downstream 1286993 11391494 ~ 11402281 (+)
rtn4 rtn4,LOC108412986 coding downstream 1351779 11456280 ~ 11479384 (+)
G183657 NA non-coding upstream 28863 10073696 ~ 10074991 (+)
G183651 NA non-coding upstream 30185 10073427 ~ 10073669 (+)
G183649 NA non-coding upstream 39606 10063683 ~ 10064248 (+)
G183647 NA non-coding upstream 40869 10062517 ~ 10062985 (+)
G183643 NA non-coding upstream 51524 10051791 ~ 10052330 (+)
G183676 NA non-coding downstream 35367 10139868 ~ 10141492 (+)
G183725 NA non-coding downstream 123717 10228218 ~ 10228492 (+)
G183770 NA non-coding downstream 342058 10446559 ~ 10446774 (+)
G183787 NA non-coding downstream 471455 10575956 ~ 10578292 (+)
G183795 NA non-coding downstream 554501 10659002 ~ 10659413 (+)
LOC111195207 LOC107375340,LOC106958509,LOC105896809,LOC107671222,LOC107690788 other upstream 2307 10098546 ~ 10101547 (+)
LOC111195140 NA other upstream 31807 10064852 ~ 10072047 (+)
LOC111195202 NA other upstream 259195 9838936 ~ 9844659 (+)
G183387 NA other upstream 810151 9211334 ~ 9293703 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other upstream 1119885 8870837 ~ 8983969 (+)
G183671 NA other downstream 5365 10109866 ~ 10110741 (+)
LOC111195212 LOC108414267,LOC106946373,LOC103130468,LOC102227983,LOC108269716,LOC108261415,LOC105936005,LOC107386469,LOC107577828,LOC107569598,LOC107677420 other downstream 40952 10145453 ~ 10171103 (+)
G183680 NA other downstream 47466 10151967 ~ 10158707 (+)
rnf24 rnf24,LOC107551705,LOC107689472 other downstream 157083 10261584 ~ 10317300 (+)
G183892 rps27a other downstream 1294561 11399062 ~ 11431926 (+)

Expression


Co-expression Network