LOC111195211


Basic Information

Item Value
gene id LOC111195211
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 10158783 ~ 10160102 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681803.1
TTCCAACCCCCGCTCATGCCCTGGTCAGCCGAACCCTCTAACATCCCCGCTGTTGATGATTGGATGCGTCGGAGCGAGGAGGTGTGGAAGGAGACTCACAGACGTATTGAGGCAGTCTTAGAGCGGCATAAACAACAAGCTGATCGTTTACGTCGTAAAACCCCCATTTATTCTCCAGGAGACCGAGTTTGGTTATCTACCAGGGATTTCCGGCTGTCTGACGGCAATAAGAAACTTTCAGTTAAGTATATAGGCCCCTTCAAGATCTTAAAGAAAATCAATGAGGTAACCTATCGTCTCGATTTACCTTCTCACTACCGAGTATGTCCCTCTTTTCATGTTTCTTTGTTAAAGCCGGTTATCCCTGGTCCTCTGGATGAGACGTCGCTTGGGTCACTTCCTCCCCCGCCTGTGGATATGGAAGGTGGTCCTGTGTATGCTGTGGAACGTTTGCTGGACTCCAGGAGGAGAAGGGGAGCCCTGGAGTACCTGGTGGACTGGAGGGGTTACGGACCAGAGGAGCGAAGTTGGGTCCCAGCGGCTGATGTCCTGGATCCCTTATTGGTGGAGGACTTCCATCGGTCTCATCCGTCCCGTCCGGCACCACGCCCCAGGGGTCGTCCTAGGAGAGGGTCTCCAGGTCCTAGAAGGGGTAGACGTGGTAGCGCGGGCTCTGTCCGGTCCCTCAGTTCCGTCCACGGCTCCAGGAGAGGTCGTCCCAGGTCCAGGGCTCCTGTCCACTCAGTTCCTGCTACCAGGCCATCTGCCCAGATCTCCACTGGGTGTGAGGGGGCGGTTCCCTTGAGTCGTCCTCTGTCTACCGTTTCGGACTCTTTGGGGGGGAGTACTGTCATGCAGCCCGACTCTCCTTCCACACcgccggactccatttcccagaatccttTGGATTATGACGTTACCGTCAGTCGCTCTCCTTCGcccaatcacgttacgctccgacgctcagactcacctgtgttctgaggaagttccGGGTTATGCTGATCACGTTTATGTATTTAAGGCAGCACTATGTAAACATTcttcgcgaggtattgtcgacttttGTTGCATACTAAGCAGTTCTTCTATGTTTTTCTTGTGTGATCTCTCGTTACGACCCTGgtttttggtttattggtttatgtctCTGGATTTGCCCCTTTTGAATTTAATGCTTGGCTGGACTGTCTTTTGGTTTCGAACACGGACTGTTTATACGACTACGTCTTTTGTATCTGGTGAggttattgtttgtttggctCTATTGTTTATAACACCTGGTTATCagcctgtaaataaaccagtctgttcatttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681803.1 True 1320 mRNA 0.51 1 10158783 10160102

Neighbor

gene id symbol gene type direction distance location
LOC111195210 NA coding upstream 3952 10149938 ~ 10154831 (+)
LOC111195208 LOC107690133,LOC107745493,LOC107715185,LOC107581013,LOC107738483,LOC107756941,LOC107569589,LOC107740227,LOC108419634,LOC108417841 coding upstream 54282 10103854 ~ 10104501 (+)
LOC111195205 NA coding upstream 161941 9995609 ~ 9996842 (+)
LOC111195273 NA coding upstream 173092 9984612 ~ 9985691 (+)
LOC111195203 LOC108411626 coding upstream 293018 9855812 ~ 9865765 (+)
LOC103042950 NA coding downstream 357755 10517857 ~ 11115248 (+)
LOC103043730 lhcgr,LOC108412992 coding downstream 1231392 11391494 ~ 11402281 (+)
rtn4 rtn4,LOC108412986 coding downstream 1296178 11456280 ~ 11479384 (+)
LOC103044327 LOC108429269,LOC108260508,LOC108260727,LOC105890925,LOC106577117 coding downstream 1344584 11504686 ~ 11510392 (+)
LOC103040140 NA coding downstream 1471703 11631805 ~ 11634990 (+)
G183676 NA non-coding upstream 17291 10139868 ~ 10141492 (+)
G183657 NA non-coding upstream 83792 10073696 ~ 10074991 (+)
G183651 NA non-coding upstream 85114 10073427 ~ 10073669 (+)
G183649 NA non-coding upstream 94535 10063683 ~ 10064248 (+)
G183647 NA non-coding upstream 95798 10062517 ~ 10062985 (+)
G183725 NA non-coding downstream 68116 10228218 ~ 10228492 (+)
G183770 NA non-coding downstream 286457 10446559 ~ 10446774 (+)
G183787 NA non-coding downstream 415854 10575956 ~ 10578292 (+)
G183795 NA non-coding downstream 498900 10659002 ~ 10659413 (+)
G183796 NA non-coding downstream 501541 10661643 ~ 10661945 (+)
G183680 NA other upstream 76 10151967 ~ 10158707 (+)
G183671 NA other upstream 48042 10109866 ~ 10110741 (+)
LOC111195207 LOC107375340,LOC106958509,LOC105896809,LOC107671222,LOC107690788 other upstream 57236 10098546 ~ 10101547 (+)
LOC111195140 NA other upstream 86736 10064852 ~ 10072047 (+)
LOC111195202 NA other upstream 314124 9838936 ~ 9844659 (+)
rnf24 rnf24,LOC107551705,LOC107689472 other downstream 101482 10261584 ~ 10317300 (+)
G183892 rps27a other downstream 1238960 11399062 ~ 11431926 (+)
clhc1 NA other downstream 1271882 11431984 ~ 11456373 (+)
ppp1r21 ppp1r21,LOC107578819 other downstream 1322950 11483052 ~ 11503479 (+)
G183996 crgm2,LOC103042598,LOC108441183,LOC108427435,LOC108427436,LOC108427240,LOC108260579,LOC108260664,LOC108260583 other downstream 1530799 11690901 ~ 11691936 (+)

Expression


Co-expression Network